Job Description P0A705 Confidence 98.86% Date Thu Jan 5 11:04:22 GMT 2012 Rank 157 Aligned Residues 165 % Identity 23% Template c1jalA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ychf protein; PDBTitle: ychf protein (hi0393) Resolution 2.40 Å

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		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.																.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	V	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	G	M	I	T	F	L	D	T	P	G	.	H	A	A	F	T	S	M	R	A	R
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																								.	.	.	.
Template Sequence		C	G	I	V	G	L	P	N	V	G	K	S	T	L	F	N	A	L	T	K	A	G	.	.	.	.	P	F	C	T	I	E	P	N	T	G	V	V	P	M	P	D	P	R	L	D	A	L	A	E	I	V	K	P	E	R	I	L	P	T	T	M	E	F	V	D	I	A	G	L	V	A	G	A	S	K	G	E	G	L
Template Known Secondary structure								T	T	S	S											T		.	.	.	.									S	S																			S														S			T	T					G	G	G
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		458	.	460	.							.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	Q	A	.	.	.	.	.	.	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	K	F	L	A	N	I	R	E	T	D	A	I	G	H	V	V	R	C	F	E	N	I	D	P	L	D	D	I	D	T	I	N	T	E	L	A	L	A	D	L	D	S	C	E	R	A	I	Q	R	L	Q	K	R	A	K	G	G	D	K	E	A	K	F	E	L	S	V	M	E	K	I	L	P	V	L	E	N	A
Template Known Secondary structure		T									T		S									S																																				T	T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
										479	480	.	.	.	.	.	.	.	.	.	490					.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.				.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.													.	.	.	.																	.	.	.																															.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.													.	.	.	.																	.	.	.																															.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	T	I	E	A	I	Q	H	A	K	A	A	Q	.	.	.	.	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	.	.	.	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.													.	.	.	.																	.	.	.																															.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.													.	.	.	.																	.	.	.													.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.
Template Sequence		G	M	I	R	S	V	G	L	D	K	E	E	L	Q	A	I	K	S	Y	N	F	L	T	L	K	P	T	M	Y	I	A	N	V	N	E	D	G	F	E	N	N	P	Y	L	D	R	V	R	E	I	A	A	K	E	G	.	.	.	.	.	.	.	.	.	A	V	V	V	P	V	C	A	A	I	E	S	E	I	A	E
Template Known Secondary structure				G	G	G	S											G	G	G			S	T	T	S										T	T		S	S	S														T	T	.	.	.	.	.	.	.	.	.														G	G	G
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230										.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
																	537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	T	G	I	D	E	L	L	D	A	I	L	L	Q	A	E	V	L	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	D	E	E	K	V	E	F	L	Q	D	L	G	I	E	E	P	G	L	N	R	V	I	R	A	G	Y	A	L	L	N	L	Q	T	Y	F	T	A	G	V	K	E	V	R	A	W	T	V	S
Template Known Secondary structure		S		S	S	T	T					T	T	S	S			S		T	T											T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions