Job Description P0A705 Confidence 100.00% Date Thu Jan 5 11:04:22 GMT 2012 Rank 3 Aligned Residues 476 % Identity 29% Template c1g7tA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.																			.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	P	R	A	P	V	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	G	I	T	Q	H	I	G	A	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	H
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		M	K	I	R	S	P	I	V	S	V	L	G	H	V	D	H	G	K	T	T	L	L	D	H	I	R	G	S	A	V	.	.	.	.	A	S	R	I	T	Q	H	I	G	A	T	E	I	P	M	D	V	I	E	G	I	C	G	D	F	L	K	K	F	S	I	R	E	T	L	P	G	L	F	F	I	D	T	P	G	H
Template Known Secondary structure														S	T	T	S	S														.	.	.	.	T	T						T	T													S		G	G	G	T	T		G	G	G	G	T											T	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	F	T	S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	F	T	T	L	R	K	R	G	G	A	L	A	D	L	A	I	L	I	V	D	I	N	E	G	F	K	P	Q	T	Q	E	A	L	N	I	L	R	M	Y	R	T	P	F	V	V	A	A	N	K	I	D	R	I	H	G	W	R	V	H	E	G	R	P	F	M	E	T	F	S	K	Q	D	I	Q	V	Q	Q	K
Template Known Secondary structure		T		G	G	G	S			T	T			S		S								T	T	T																T	T										G	G	G	S	T	T					T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
						507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.							.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.				.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure		.	.	.	.																	.	.	.	.	.	.																																		.	.	.
Query SS confidence		.	.	.	.																	.	.	.	.	.	.																																		.	.	.
Query Sequence		.	.	.	.	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	.	.	.	.	.	.	E	W	G	G	E	S	Q	F	V	H	V	S	A	K	A	G	T	G	I	D	E	L	L	D	A	I	L	L	Q	A	E	V	L	.	.	.	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E	S	F
Query Conservation		.	.	.	.																	.	.	.	.	.	.																																		.	.	.
Alig confidence		.	.	.	.																	.	.	.	.	.	.																																		.	.	.
Template Conservation
Template Sequence		L	D	T	K	V	Y	E	L	V	G	K	L	H	E	E	G	F	E	S	E	R	F	D	R	V	T	D	F	A	S	Q	V	S	I	I	P	I	S	A	I	T	G	E	G	I	P	E	L	L	T	M	L	M	G	L	A	Q	Q	Y	L	R	E	Q	L	K	I	E	E	D	S	P	A	R	G	T	I	L	E	V	K
Template Known Secondary structure																T	T						T	T	T		S		T	T	T	S								S	S	S		T	T																	S	G	G	G				T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.					.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		L	D	K	G	R	G	P	V	A	T	V	L	V	R	E	G	T	L	H	K	G	D	I	V	L	C	G	F	E	Y	G	.	.	.	.	R	V	R	A	M	R	N	E	L	G	Q	E	V	L	E	A	G	P	S	I	P	V	E	I	L	G	L	S	G	V	P	A	A	G	D	E	V	T	V	V	R	D	E	K	K
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.
Template Conservation
Template Sequence		E	E	T	G	L	G	M	T	I	D	A	V	I	Y	D	G	I	L	R	K	D	D	T	I	A	M	M	T	S	K	D	V	I	S	T	R	I	R	S	L	L	K	P	R	P	S	R	K	K	F	Q	K	V	D	E	V	V	A	A	A	G	I	K	I	V	A	P	G	I	D	D	V	M	A	G	S	P	L	R	V
Template Known Secondary structure				T	T	S											S				T	T							B	S	S	S							S											S					S				S	S								S	S		S	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	V	A	L	Y	R	Q	G	K	F	R	E	V	K	L	A	R	Q	Q	K	S	K	L	E	N	M	F	A	N	M	T	E	G	E	V	H	E	V	N	I	V	L	K	A	D	V	Q	G	S	V	E	A	I	S	D	S	L	L	K	L	S	T	D	E	V	K	V	K	I	I	G	S	G	V	G	G	I	T
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Sequence		V	T	D	P	E	K	V	R	E	E	I	L	S	E	I	E	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	D	T	D	E	A	G	V	V	V	K	A	D	T	L	G	S	L	E	A	V	V	K	I	L	R	D	M	Y	.	.	.	.	.	V	P	I	K	V	A	D	I	G	D	V	S
Template Known Secondary structure			S	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B		S	S	S							S	S														T	T	.	.	.	.	.				S					S	S	B
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.																.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.						.	.	.	.	.	380	.	.	.	.	.	.
		730	.	.	.	.	.	.	.	.	.							740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.				.	.	.	.	790	.	.	.	.	.	.	.	.	.	800
Predicted Secondary structure												.	.	.	.	.	.																																															.	.	.
Query SS confidence												.	.	.	.	.	.																																															.	.	.
Query Sequence		E	T	D	A	T	L	A	A	A	S	.	.	.	.	.	.	N	A	I	L	V	G	F	N	V	R	A	D	A	S	A	R	K	V	I	E	A	E	S	L	D	L	R	Y	Y	S	V	I	Y	N	L	I	D	E	V	K	A	A	M	S	G	M	.	.	.	L	S	P	E	L	K	Q	Q	I	I	G	L	A	E	V
Query Conservation												.	.	.	.	.	.																																															.	.	.
Alig confidence												.	.	.	.	.	.																																															.	.	.
Template Conservation
Template Sequence		R	R	D	V	V	N	A	G	I	A	L	Q	E	D	R	V	Y	G	A	I	I	A	F	N	V	K	V	I	P	S	A	A	Q	E	L	K	N	S	D	I	K	L	F	Q	G	N	V	I	Y	R	L	M	E	E	Y	E	E	W	V	R	G	I	E	E	E	K	K	K	K	W	M	E	A	I	I	K	P	A	S	I
Template Known Secondary structure													S	S		T	T	S							S			B							T	T		S	S	S							S																										T	T	S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		801	.	.	.	.	.				.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.				.	870	.	.	.	.
Predicted Secondary structure								.	.	.																																																															.	.	.
Query SS confidence								.	.	.																																																															.	.	.
Query Sequence		R	D	V	F	K	S	.	.	.	P	K	F	G	A	I	A	G	C	M	V	T	E	G	V	V	K	R	H	N	P	I	R	V	L	R	D	N	V	V	I	Y	E	G	E	L	E	S	L	R	R	F	K	D	D	V	N	E	V	R	N	G	M	E	C	G	I	G	V	K	N	Y	.	.	.	N	D	V	R	T	G
Query Conservation								.	.	.																																																															.	.	.
Alig confidence								.	.	.																					.											.	.																														.	.	.
Template Conservation																															.											.	.
Template Sequence		R	L	I	P	K	L	V	F	R	Q	S	K	P	A	I	G	G	V	E	V	L	T	G	V	I	R	Q	G	Y	.	P	L	M	N	D	D	G	E	T	V	.	.	G	T	V	E	S	M	Q	D	K	G	E	N	L	K	S	A	S	R	G	Q	K	V	A	M	A	I	K	D	A	V	Y	G	K	T	I	H	E	G
Template Known Secondary structure												S	S	S														T	T		.					T	T	S				.	.									T	T				S				T	T									T			B	T	T	T	B		T	T
Template Predicted Secondary structure																															.											.	.
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.			.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		875	.	.	.	.	880	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	I	E	V	F	E	I	I	E	I	Q	R	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	L	Y	V	D	I	P	E	N	H	Y	H	I	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.