Job Description P0A705 Confidence 100.00% Date Thu Jan 5 11:04:22 GMT 2012 Rank 14 Aligned Residues 238 % Identity 29% Template c1d2eA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:elongation factor tu (ef-tu); PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp Resolution 1.94 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.																	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	P	V	.	V	T	I	M	G	H	V	D	H	G	K	T	S	L	L	D	Y	I	R	S	T	K	V	A	S	G	E	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	T	Q	H	I	G	A	Y	H	V	E	T	E	N	G	M	I	T	F	L	D	T	P	G	H	A	A	F	T
Query Conservation						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	K	I	L	A	E	G	G	G	A	K	F	K	K	Y	E	E	I	D	N	A	P	E	E	R	A	R	G	I	T	I	N	A	A	H	V	E	Y	S	T	A	A	R	H	Y	A	H	T	D	C	P	G	H	A	D	Y	V
Template Known Secondary structure											S	S	T	T	S	S															T	T	S	B										S							T	T													S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.	.	500	.	.	.	.	.	.			.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.																.	.
Query SS confidence																																									.																.	.
Query Sequence		S	M	R	A	R	G	A	Q	A	T	D	I	V	V	L	V	V	A	A	D	D	G	V	M	P	Q	T	I	E	A	I	Q	H	A	K	A	A	Q	V	.	P	V	V	V	A	V	N	K	I	D	K	P	E	A	D	.	.	P	D	R	V	K	N	E	L	S	Q	Y	G	I	L	P	E	E	W	G	G	E	S	Q
Query Conservation																																									.																.	.
Alig confidence																																									.																.	.
Template Conservation
Template Sequence		K	N	M	I	T	G	T	A	P	L	D	G	C	I	L	V	V	A	A	N	D	G	P	M	P	Q	T	R	E	H	L	L	L	A	R	Q	I	G	V	E	H	V	V	V	Y	V	N	K	A	D	A	V	Q	D	S	E	M	V	E	L	V	E	L	E	I	R	E	L	L	T	E	F	G	Y	K	G	E	E	T	P
Template Known Secondary structure							T	S	S			S								T	T	T		S														T	T											G	G	G		S																			T	T	S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		530	.	.	.	.	.	.	.	.	.	540	.											.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	H	V	S	A	K	A	G	T	G	I	.	.	.	.	.	.	.	.	.	.	D	E	L	L	D	A	I	L	L	Q	A	E	V	L	E	L	K	A	V	R	K	G	M	A	S	G	A	V	I	E	S	F	L	D	K	G	R	G	P	V	A	T	V	L	V	R	E	G	T	L	H	K	G	D	I	V	L	C
Query Conservation														.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																																	.	.
Template Sequence		I	I	V	G	S	A	L	C	A	L	E	Q	R	D	P	E	L	G	L	K	S	V	Q	K	L	L	D	A	V	D	T	.	.	Y	I	P	V	P	T	R	D	L	E	K	P	F	L	L	P	V	E	S	V	Y	S	I	P	G	R	G	T	V	V	T	G	T	L	E	R	G	I	L	K	K	G	D	E	C	E	F
Template Known Secondary structure												T	T			T	T	T	T														.	.		S							T	T	S													T	T	T										B	S				T	T
Template Predicted Secondary structure																																	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		600	.	.	.	.	.	.	.	.				.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		G	F	E	Y	G	R	V	R	A	.	.	.	M	R	N	E	L	G	Q	E	V	L	E	A	G	P	S	I	P	V	E	I	L
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence		L	G	H	S	K	N	I	R	T	V	V	T	G	I	E	M	F	H	K	S	L	D	R	A	E	A	G	D	N	L	G	A	L
Template Known Secondary structure				T	T													T	T				S				T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions