Job Description P0C0K3 Confidence 23.31% Date Thu Jan 5 11:29:52 GMT 2012 Rank 213 Aligned Residues 69 % Identity 14% Template c3mi9A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure															.																	.	.	.
Query SS confidence															.																	.	.	.
Query Sequence		N	S	Y	E	N	R	V	Y	Q	F	Q	D	E	.	D	R	R	R	F	V	V	K	F	Y	R	P	E	R	W	T	.	.	.	A	D	Q	I	L	E	E	H	Q	F	A	L	Q	L	V	N	D	E	V	P	V	A	A	P	V	A	F	N	G	Q	T	L	L	N	H	Q	G	F	Y	F	A	V	F	P	S	V	G
Query Conservation															.																	.	.	.
Alig confidence						.									.																	.	.	.															.	.											.	.	.	.	.
Template Conservation						.																																											.	.											.	.	.	.	.
Template Sequence		G	T	F	G	.	E	V	F	K	A	R	H	R	K	T	G	Q	K	V	A	L	K	K	V	L	M	E	N	E	K	E	G	F	P	I	T	A	L	R	E	I	K	I	L	Q	L	L	.	.	K	H	E	N	V	V	N	L	I	E	.	.	.	.	.	I	C	R	T	K	G	S	I	Y	L	V	F	D	F	C	E
Template Known Secondary structure			S	T	T	.	S							T	T	T												S	S		S	S	S	S															.	.			T	T	B						.	.	.	.	.																S
Template Predicted Secondary structure						.																																											.	.											.	.	.	.	.
Template SS confidence
		28	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		111
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		108

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions