Job Description P0C0K3 Confidence 99.92% Date Thu Jan 5 11:29:52 GMT 2012 Rank 20 Aligned Residues 236 % Identity 13% Template c3hamA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: structure of the gentamicin-aph(2")-iia complex Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	Y	E	N	R	V	Y	Q	F	Q	D	E	D	R	R	R	F	V	V	K	F	Y	R	P	E	R	W	T	A	D	Q	I	L	E	E	H	Q	F	A	L	Q	L	V	N	D	E	V	P	V	A	A	P	V	A	F	N	G	Q	T	L	L	N	H	Q	G	F	Y	F	A	V	F	P	S	V	G	G	R	Q	F
Query Conservation
Alig confidence												.	.	.	.													.																											.	.	.	.	.	.	.
Template Conservation												.	.	.	.													.																											.	.	.	.	.	.	.
Template Sequence		S	G	D	D	S	D	T	F	L	C	.	.	.	.	N	E	Q	Y	V	V	K	V	P	K	R	D	.	S	V	R	I	S	Q	K	R	E	F	E	L	Y	R	F	L	E	N	C	K	L	S	Y	Q	I	P	.	.	.	.	.	.	.	A	V	V	Y	Q	S	D	R	F	N	I	M	K	Y	I	K	G	E	R	I
Template Known Secondary structure				S	S							.	.	.	.	T	T	T							S	S	S	.																	T	T	S			S	S	B			.	.	.	.	.	.	.							S	S										B
Template Predicted Secondary structure												.	.	.	.													.																											.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.								.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
											115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	E	A	D	N	I	D	Q	M	E	A	V	G	R	Y	L	G	R	M	H	Q	T	G	R	K	Q	L	F	I	.	.	.	H	R	P	T	I	G	L	N	E	Y	L	I	E	P	R	K	L	F	E	D	A	T	L	I	P	S	G	L	K	A	A	F	L	K	A	T	D	E	L	I
Query Conservation		.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		T	Y	E	Q	Y	H	K	L	S	E	K	E	K	D	A	L	A	Y	D	E	A	T	F	L	K	E	L	H	S	I	E	I	D	C	S	V	S	L	F	S	D	A	L	V	N	K	K	D	K	F	L	Q	D	K	K	L	L	I	S	I	L	E	K	E	Q	L	L	T	D	E	M	L	E	H	I	E	T	I	Y	E
Template Known Secondary structure							T	T	S																						S				T	T	S					T	T	B																					T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.																									.
Query SS confidence																																.	.																									.
Query Sequence		A	A	V	T	A	H	W	R	E	D	F	T	V	L	R	L	H	G	D	C	H	A	G	N	I	L	W	R	D	G	.	.	P	M	F	V	D	L	D	D	A	R	N	G	P	A	V	Q	D	L	W	M	L	L	N	G	.	D	K	A	E	Q	R	M	Q	L	E	T	I	I	E	A	Y	E	E	F	S	E	F	D
Query Conservation																																.	.																									.
Alig confidence																																.	.																									.																						.	.
Template Conservation																																																																																.	.
Template Sequence		N	I	L	N	N	A	V	L	F	K	Y	T	P	C	L	V	H	N	D	F	S	A	N	N	M	I	F	R	N	N	R	L	F	G	V	I	D	F	G	D	F	N	V	G	D	P	D	N	D	F	L	C	L	L	D	C	S	T	D	D	F	G	K	E	F	G	R	K	V	L	K	Y	Y	Q	H	K	A	P	.	.
Template Known Secondary structure					T		G	G	G	G									S			S	G	G	G					T	T									T	T						G	G	G	G	T	T	T	T	T	S	S	S	S	S	S	S											T	T	T		S			.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	E	I	G	L	I	E	P	L	R	A	M	R	L	V	Y	Y	L	A	W	L	M	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	A	E	R	K	A	E	L	N	D	V	Y	W	S	I	D	Q	I	I	Y	G	Y	E	R
Template Known Secondary structure														T												T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions