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Job DescriptionP03018
Confidence100.00%DateThu Jan 5 10:57:53 GMT 2012
Rank7Aligned Residues313
% Identity43%Templated1pjra1
SCOP infoP-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT
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Template Conservation       
   
   
   
       

 
 





  
   
  

         

 

 
  
      
       
Template Sequence  FLSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG
Template Known Secondary structure  TTS


SS

TTS
TT


GGGSSGG
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
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Template Conservation          
                                                                       
Template Sequence  AAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFA
Template Known Secondary structure  GGTTSGGGGT

TT


TTS
TTTT

TT

T
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
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Template Sequence  KRYY. . EKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF
Template Known Secondary structure  T

..TT
TT

SSSGGG

TTT
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   163... ...170.........180.........190.........200.........210.........220.........230.........240
 
   241........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADG
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Template Sequence  QNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEG
Template Known Secondary structure 


GGG


GGGT

TTSTT

B
SSS
TT
SS





B
SS


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   244.....250.........260.........270.........280.........290.........300.........310........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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