Job Description P17888 Confidence 100.00% Date Wed Jan 25 15:20:40 GMT 2012 Rank 4 Aligned Residues 377 % Identity 17% Template c4a4zA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp Resolution 2.40 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	Y	A	V	S	G	E	R	L	R	L	N	T	E	Q	A	T	A	V	G	A	I	H	S	A	A	D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K	T	E	V	Y	L	S	V	L	E	N	V	L	A	Q	G	K	Q	A	L	V	M	V	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E
Query Conservation
Alig confidence																											.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		I	P	N	P	A	R	S	W	P	F	E	L	D	T	F	Q	K	E	A	V	Y	H	L	E	Q	.	.	.	.	G	D	S	V	F	V	A	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	M	A	H	R	N	M	T	K	T	I	Y	T	S	P	I	K	A	L	S	N	Q	K	F	R	D	F	K	E
Template Known Secondary structure			S	S		S				S	S															T	.	.	.	.	T									T	T	S		S														T	T								S		G	G	G										T
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.					.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310								.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																													.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.
Query Sequence		R	F	N	A	P	V	E	V	L	H	S	G	L	N	D	S	E	R	L	S	A	W	L	K	A	K	N	G	E	A	A	I	V	I	G	T	R	S	A	L	F	T	P	.	.	.	.	.	.	.	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L
Query Conservation																																													.	.	.	.	.	.	.
Alig confidence					.											.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation					.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	V	.	N	I	G	L	I	T	G	D	V	Q	.	.	.	.	.	.	.	.	.	.	.	I	N	P	D	A	N	C	L	I	M	T	T	E	I	L	R	S	M	L	Y	R	G	A	D	L	I	R	D	V	E	F	V	I	F	D	E	V	H	Y	V	N	D	Q	D	R	G	V	V	W	E	E	V	I	I	M
Template Known Secondary structure		T			.							S	S			.	.	.	.	.	.	.	.	.	.	.			T	T	S	S																T		S	G	G	G	G									T	T				T	T		T	T
Template Predicted Secondary structure					.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		395	.	.		.	.	400	.	.	.	.	.	.	.												.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	Y	R	A	H	S	E	Q	I	P	I	I	L	G	S	A	T	.	P	A	L	E	T	L	C	N	V	Q	Q	K	K	Y	R	L	L	R	L	T	R	R	A	G	N	A	R	P	A	I	Q	H	V	L	D	L	K	G	Q	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.													.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		L	.	.	.	.	.	P	Q	H	V	K	F	I	L	L	S	A	T	V	P	N	T	Y	E	F	A	N	W	I	G	R	T	K	Q	K	N	I	Y	V	I	S	T	P	K	R	P	V	P	L	E	I	N	I	W	A	K	K	E	L	I	P	V	I	N	Q	N	S	E	F	L	E	A	N	F	R	K	H	K	E	I
Template Known Secondary structure		S	.	.	.	.	.		T	T											T	T													T									S	S		S	S									T	T								T	T			B
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		465						.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
				400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure		.	.																					.
Query SS confidence		.	.																					.
Query Sequence		.	.	Q	A	G	L	A	P	A	L	I	T	R	M	R	Q	H	L	Q	A	D	N	.	Q	V	I	L	F	L	N	R	R	G	F	A	P	A	L	L	C	H	D	C	G	W	I	A	E	C	P	R	C	D	H	Y	Y	T	L	H	Q	A	Q	H	H	L	R	C	H	H	C	D	S	Q	R	P	V	P	R	Q	C
Query Conservation		.	.																					.
Alig confidence		.	.																					.																																																					.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		L	N	D	G	P	S	K	K	T	W	P	E	I	V	N	Y	L	R	K	R	E	L	L	P	M	V	V	F	V	F	S	K	K	R	C	E	E	Y	A	D	W	L	E	G	I	N	F	C	N	N	K	E	K	S	Q	I	H	M	F	I	E	K	S	I	T	R	L	K	K	E	D	R	D	L	P	.	.	.	.	.
Template Known Secondary structure								T	T												T	T			S						S											T	T	T	T																					T	T	S						T			.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	C	G	S	T	H	L	V	P	V	G	L	G	T	E	Q	L	E	Q	T	L	A	P	L	F	P	G	V	P	I	S	R	I	D	R	D	T	T	S	R	K	G	A	L	E	Q	Q	L	A	E	V	H	R	G	G	A	R	I	L	I	G	T	Q	M	L	A	K	G	H	H	F	P	D	V	T	L	V	A	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.																																																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.																																																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	L	K	T	R	S	L	L	E	R	.	.	.	G	I	A	V	H	H	G	G	L	L	P	I	V	K	E	L	I	E	I	L	F	S	K	G	F	I	K	V	L	F	A	T	E	T	F	A	M	G	L	N	L	P	T	R	T	V	I	F	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	.	.	.	T						T	T	S														T	T			S						T					S						S					.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.																																																	.
Template SS confidence
																			680	.	.	.	.	.	.	.	.	.	690				.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.			590	.	.	.	.	.	.	.			.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
Predicted Secondary structure																																			.	.									.	.
Query SS confidence																																			.	.									.	.
Query Sequence		L	D	V	D	G	A	L	F	S	A	D	F	R	S	A	E	R	F	A	Q	L	Y	T	Q	V	A	G	R	A	G	R	A	G	.	.	K	Q	G	E	V	V	L	Q	.	.	T	H	H	P	E	H	P	L	L	Q	T	L	L	Y	K	G	Y
Query Conservation																																			.	.									.	.
Alig confidence		.	.	.																															.	.									.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	S	I	R	K	H	D	G	N	G	L	R	E	L	T	P	G	E	F	T	Q	M	A	G	R	A	G	R	R	G	L	D	S	T	G	T	V	I	V	M	A	Y	N	S	P	L	S	I	A	T	F	K	E	V	T	M	G	V	P
Template Known Secondary structure		.	.	.	S		S					T	T															G	G	G			T	T	T		S	S									S	S													S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					739	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.