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Job DescriptionP17888
Confidence99.76%DateWed Jan 25 15:20:40 GMT 2012
Rank93Aligned Residues188
% Identity22%Templatec3fmoB_
PDB info PDB header:oncoprotein/hydrolaseChain: B: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19
Resolution2.51 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   156...160.........170.........180.........190.........200.........210.........220.........230.....
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Query Sequence  ATLEFNDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYL
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Template Sequence  EELRLKPQLLQGVYAMGF. . . . . . . . . . . . . . . . . . . . . . . NRPSKIQENALPLMLA. . EPPQNLIAQSQSGTGKTAAFV
Template Known Secondary structure  GGGT

TT
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   95....100.........110.. .......120........ .130.........140.........
 
   236...240...... ...250.........260.........270. ........280.........290.........300........
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Query Sequence  SVLENVLAQGK. . . QALVMVPEIGLTPQTIARFRERFNA. . . . PVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSALF
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Template Sequence  LAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI. . . . . . . SEQIVIGTPGTVL
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   150.........160.........170.........180.........190.........200......... 210.........220..
 
   309310. ........320.........330.........340.........350.........360. ........370........
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Query Sequence  TPF. . . . . . . . KNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPAL. . ETLCNVQQKKYRLLRLT
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Template Sequence  DWCSKLKFIDPKKIKVFVLDEADVMIATQG. . . . HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK
Template Known Secondary structure  TTT



GGG
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   223......230.........240.........250.. .......260.........270.........280.........290........
 
   379
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Query Sequence  R
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Template Sequence  R
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   299
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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