Job Description P17888 Confidence 100.00% Date Wed Jan 25 15:20:40 GMT 2012 Rank 26 Aligned Residues 345 % Identity 17% Template c3fhtA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna Resolution 2.20 Å

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		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	F	N	D	A	A	L	Q	A	L	R	K	K	G	L	C	D	L	A	S	E	T	P	E	F	S	D	W	R	T	N	Y	A	V	S	G	E	R	L	R	L	N	T	E	Q	A	T	A	V	G	A	I	H	S	A	A	D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K	T	E	V	Y	L	S	V
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		L	R	L	K	P	Q	L	L	Q	G	V	Y	A	M	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	L	A	.	.	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	V	L	A
Template Known Secondary structure		G	T												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S														S	.	.	S	S										T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																								.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		238	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure											.	.	.																										.	.	.	.
Query SS confidence											.	.	.																										.	.	.	.
Query Sequence		L	E	N	V	L	A	Q	G	K	.	.	.	Q	A	L	V	M	V	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E	R	F	N	A	.	.	.	.	P	V	E	V	L	H	S	G	L	N	D	S	E	R	L	S	A	W	L	K	A	K	N	G	E	A	A	I	V	I	G	T	R	S	A	L	F	T	P
Query Conservation											.	.	.																										.	.	.	.
Alig confidence											.	.	.																										.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.
Template Sequence		M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y	E	L	A	L	Q	T	G	K	V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	L	E	R	G	Q	K	I	.	.	.	.	.	.	.	S	E	Q	I	V	I	G	T	P	G	T	V	L	D	W
Template Known Secondary structure								T	T	S		S								S	S															T	T	T	S	T	T								T	T					T	T				.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.								210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
										311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L	A	V	Y	R	A	H	S	E	Q	I	P	I	I	L	G	S	A	T	P	A	L	E	T	L	C	N	V	Q	Q	K	K	Y	R	L	L	R	L	T	R	R	A	G
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		C	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A	D	V	M	.	.	.	.	I	A	T	Q	G	H	Q	D	Q	S	I	R	I	Q	R	M	L	P	R	N	C	Q	M	L	L	F	S	A	T	F	E	D	S	V	W	K	F	A	Q	K	V	V	P	D	P	N	V	I	K	L	K	R	E
Template Known Secondary structure			T	T	S		S	S		G	G	G								T					.	.	.	.		S	T	T	T	T										T	S		T	T								S														S	S	S								G	G
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	R	P	A	I	Q	H	V	L	D	L	K	G	Q	K	V	Q	A	G	L	A	P	A	L	I	T	R	M	R	Q	H	L	Q	A	D	N	Q	V	I	L	F	L	N	R	R	G	F	A	P	A	L	L	C	H	D	C	G	W	I	A	E	C	P	R	C	D	H	Y	Y	T	L	H	Q	A	Q	H	H	L	R
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	T	L	D	T	I	K	Q	Y	Y	V	L	C	S	S	R	D	E	K	F	Q	A	L	C	N	L	Y	G	A	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	S	S		T	T									S	S																S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	H	H	C	D	S	Q	R	P	V	P	R	Q	C	P	S	C	G	S	T	H	L	V	P	V	G	L	G	T	E	Q	L	E	Q	T	L	A	P	L	F	P	G	V	P	I	S	R	I	D	R	D	T	T	S	R	K	G	A	L	E	Q	Q	L	A	E	V	H	R	G	G	A	R	I	L	I	G	T	Q	M	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	Q	A	M	I	F	C	H	T	R	K	T	A	S	W	L	A	A	E	L	S	K	E	G	H	Q	V	A	L	L	S	G	E	M	M	V	E	Q	R	A	A	V	I	E	R	F	R	E	G	K	E	K	V	L	V	T	T	N	V	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S							S	S														T	T								T	T	S														T	T	S		S						G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	G	H	H	F	P	D	V	T	L	V	A	L	L	D	V	D	G	A	L	F	S	A	D	F	R	S	A	E	R	F	A	Q	L	Y	T	Q	V	A	G	R	A	G	R	A	G	K	Q	G	E	V	V	L	Q	T	H	H	P	E	H	P	L	L	Q	T	L	L	Y
Query Conservation
Alig confidence																											.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.
Template Sequence		A	R	G	I	D	V	E	Q	V	S	V	V	I	N	F	D	L	P	V	D	K	D	G	N	P	.	.	.	.	.	.	D	N	E	T	Y	L	H	R	I	G	R	T	G	R	F	G	K	R	G	L	A	V	N	M	V	D	S	K	H	S	M	N	I	L	N	R	I	Q
Template Known Secondary structure		T	S	S				T	T							S	S			B		S	S	S	S	B	.	.	.	.	.	.										T	T	S	S		T	T											S
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.							.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.