Job Description P17888 Confidence 99.90% Date Wed Jan 25 15:20:40 GMT 2012 Rank 61 Aligned Residues 198 % Identity 18% Template c3dkpA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx52; PDBTitle: human dead-box rna-helicase ddx52, conserved domain i in complex with2 adp Resolution 2.10 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	D	Q	V	A	T	L	E	F	N	D	A	A	L	Q	A	L	R	K	K	G	L	C	D	L	A	S	E	T	P	E	F	S	D	W	R	T	N	Y	A	V	S	G	E	R	L	R	L	N	T	E	Q	A	T	A	V	G	A	I	H	S	A	A	D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		F	Q	Q	L	D	Q	E	Y	K	I	N	S	R	L	L	Q	N	I	L	D	A	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	P	T	P	I	Q	M	Q	A	I	P	V	M	L	H	.	.	.	.	G	R	E	L	L	A	S	A	P	T	G	S	G	K
Template Known Secondary structure																						T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S														T	.	.	.	.	T									T	T	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																								.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		T	E	V	Y	L	S	V	L	E	N	V	L	.	.	.	.	A	Q	G	K	Q	A	L	V	M	V	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E	R	F	N	A	P	V	E	V	L	H	S	G	L	N	D	S	E	R	L	S	A	W	L	K	A	K	N	G	E	A	A	I	V	I	G	T	R	S	A
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		T	L	A	F	S	I	P	I	L	M	Q	L	K	Q	P	A	N	K	G	F	R	A	L	I	I	S	P	T	R	E	L	A	S	Q	I	H	R	E	L	I	K	I	S	E	G	T	G	F	R	I	H	M	I	H	K	A	A	V	A	A	K	K	F	G	P	K	S	S	K	K	F	D	I	L	V	T	T	P	N	R
Template Known Secondary structure															S			S	S	S								S	S															T	T	T	S															T	T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		307	.	.										310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.
Query Sequence		L	F	T	.	.	.	.	.	.	.	.	.	P	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L	A	V	Y	R	A	H	S	E	Q	I	P	I	I	L	G	S	A	T	P	A	L	E	T	L	C	N	V	Q	Q	K	K	Y	R	L	L	R	L
Query Conservation					.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.																			.	.												.
Template Conservation																																.	.												.
Template Sequence		L	I	Y	L	L	K	Q	D	P	P	G	I	D	L	A	S	V	E	W	L	V	V	D	E	S	D	K	L	F	E	.	.	D	G	G	F	R	D	Q	L	A	S	I	.	F	L	A	C	T	S	H	K	V	R	R	A	M	F	S	A	T	F	A	Y	D	V	E	Q	W	C	K	L	N	L	D	N	V	I	S	V
Template Known Secondary structure								S	S	S		S				T	T							S	S							.	.												.							T	T								S	S													S	S	S
Template Predicted Secondary structure																																.	.												.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		378
Predicted Secondary structure
Query SS confidence
Query Sequence		T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		375

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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