Job Description P17888 Confidence 100.00% Date Wed Jan 25 15:20:40 GMT 2012 Rank 11 Aligned Residues 380 % Identity 17% Template c2zj2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1 Resolution 2.40 Å

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		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	T	L	E	F	N	D	A	A	L	Q	A	L	R	K	K	G	L	C	D	L	A	S	E	T	P	E	F	S	D	W	R	T	N	Y	A	V	S	G	E	R	L	R	L	N	T	E	Q	A	T	A	V	G	A	I	H	S	A	A	D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K	T	E	V	Y
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Sequence		V	D	E	L	R	V	D	E	R	I	K	S	T	L	K	E	R	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	F	Y	P	P	Q	A	E	A	L	K	.	.	.	S	G	I	L	E	G	K	N	A	L	I	S	I	P	T	A	S	G	K	T	L	I	A
Template Known Secondary structure		G	G	G	S		S											T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B										T	.	.	.	T	T	G	G	G	T							S		G	G	G	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																								.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
		235	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure										.																											.	.																																									.	.	.
Query SS confidence										.																											.	.																																									.	.	.
Query Sequence		L	S	V	L	E	N	V	L	.	A	Q	G	K	Q	A	L	V	M	V	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E	R	.	.	F	N	A	P	V	E	V	L	H	S	G	L	N	D	S	E	R	L	S	A	W	L	K	A	K	N	G	E	A	A	I	V	I	G	T	R	S	A	L	F	.	.	.
Query Conservation										.																											.	.																																									.	.	.
Alig confidence										.																											.	.																		.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.
Template Sequence		E	I	A	M	V	H	R	I	L	T	Q	G	G	K	A	V	Y	I	V	P	L	K	A	L	A	E	E	K	F	Q	E	F	Q	D	W	E	K	I	G	L	R	V	A	M	A	T	G	D	Y	D	S	K	D	E	.	.	.	.	.	.	.	W	L	G	K	Y	D	I	I	I	A	T	A	E	K	F	D	S	L	L
Template Known Secondary structure														S							S	S	T	T	S								T	G	G	G	G	G	G	T								S			S				G	.	.	.	.	.	.	.	G	G	G	G		S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
						309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure		.	.	.	.																																																			.
Query SS confidence		.	.	.	.																																																			.
Query Sequence		.	.	.	.	T	P	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L	A	V	Y	R	A	H	S	E	Q	I	P	I	I	L	G	S	A	T	.	P	A	L	E	T	L	C	N	V	Q	Q	K	K	Y	R	L	L	R	L	T	R	R	A	G	N
Query Conservation		.	.	.	.																																																			.
Alig confidence		.	.	.	.																																			.	.	.	.	.												.												.	.
Template Conservation																																								.	.	.	.	.																								.	.
Template Sequence		R	H	G	S	S	W	I	K	D	V	K	I	L	V	A	D	E	I	H	L	I	G	S	R	D	R	G	A	T	L	E	V	I	L	A	H	M	L	.	.	.	.	.	G	K	A	Q	I	I	G	L	S	A	T	I	G	N	P	E	E	L	A	E	W	L	N	.	.	A	E	L	I	V	S	D	W	R	P	V	K
Template Known Secondary structure				T		G	G	G	G	G								T	G	G	G	G	G		T	T	T												B	.	.	.	.	.	T	T	B										S									T	T	.	.										S	S
Template Predicted Secondary structure																																								.	.	.	.	.																								.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	P	A	I	Q	H	V	L	D	L	K	G	Q	K	V	Q	A	G	L	A	P	A	L	I	T	R	M	R	Q	H	L	Q	A	D	N	Q	V	I	L	F	L	N	R	R	G	F	A	P	A	L	L	C	H	D	C	G	W	I	A	E	C	P	R	C	D	H	Y	Y	T	L	H	Q	A	Q	H	H	L	R	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	R	G	V	F	Y	Q	G	F	V	T	W	E	D	G	S	I	D	R	F	S	S	W	E	E	L	V	Y	D	A	I	R	K	K	K	G	A	L	I	F	V	N	M	R	R	K	A	E	R	V	A	L	E	L	S	K	K	V	K	S	L	L	T	K	P	E	I	R	A	L	N	E	L	A	D	S	L	E	E
Template Known Secondary structure									T	T					T	T	S						S	S	T										T	T								S	S																G	G	G																S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	C	D	S	Q	R	P	V	P	R	Q	C	P	S	C	G	S	T	H	L	V	P	V	G	L	G	T	E	Q	L	E	Q	T	L	A	P	L	F	P	G	V	P	I	S	R	I	D	R	D	T	T	S	R	K	G	A	L	E	Q	Q	L	A	E	V	H	R	G	G	A	R	I	L	I	G	T	Q	M	L	A
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Sequence		N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	N	E	K	L	A	K	A	I	R	G	.	.	.	G	V	A	F	H	H	A	G	L	G	R	D	E	R	V	L	V	E	E	N	F	R	K	G	I	I	K	A	V	V	A	T	P	T	L	S
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	.	.	.	T						T	T	S														T	T	S	S							S	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template SS confidence
		283																													.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.			.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		K	G	H	H	F	P	D	V	T	L	V	A	L	L	D	V	D	G	A	L	F	S	A	D	F	R	S	A	E	R	F	A	Q	L	Y	T	Q	V	A	G	R	A	G	R	A	G	K	Q	.	.	G	E	V	V	L	Q	T	H	H	P	E	H	P	L	L	Q	T	L	L	Y	K	G
Query Conservation																																																		.	.
Alig confidence																	.	.	.	.	.	.	.	.																										.	.
Template Conservation																	.	.	.	.	.	.	.	.
Template Sequence		T	P	A	F	R	V	I	I	R	D	I	W	R	Y	S	.	.	.	.	.	.	.	.	D	F	G	M	E	R	I	P	I	I	E	V	H	Q	M	L	G	R	A	G	R	P	K	Y	D	E	V	G	E	G	I	I	V	S	T	S	D	D	P	R	E	V	M	N	H	Y	I	F	G
Template Known Secondary structure				B	S							S					.	.	.	.	.	.	.	.	T	T															T	T	B			T	T	T		S									S	S	S										T	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350									.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.