Job Description P17888 Confidence 99.86% Date Wed Jan 25 15:20:40 GMT 2012 Rank 66 Aligned Residues 374 % Identity 16% Template c2vl7A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:xpd; PDBTitle: structure of s. tokodaii xpd4 Resolution 2.25 Å

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	E	Q	A	T	A	V	G	A	I	H	S	A	A	D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K	T	E	V	Y	L	S	V	L	E	N	V	L	A	Q	G	K	Q	A	L	V	M	V	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E	R	F	N	A	P	V	E	V	L	H	S	G
Query Conservation
Alig confidence																																												.	.	.																						.
Template Conservation																																												.	.	.																						.
Template Sequence		R	Q	W	Q	A	E	K	L	G	E	A	I	N	A	L	K	H	G	K	T	L	L	L	N	A	K	P	G	L	G	K	T	V	F	V	E	V	L	G	M	Q	L	.	.	.	K	K	K	V	L	I	F	T	R	T	H	S	Q	L	D	S	I	Y	K	N	A	.	K	L	L	G	L	K	T	G	F	L	R	A	N
Template Known Secondary structure																		T	T									T	T	S														.	.	.	T								S													.	G	G	G	T								T	T
Template Predicted Secondary structure																																												.	.	.																						.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310															.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	D	S	E	R	L	S	A	W	L	K	A	K	N	G	E	A	A	I	V	I	G	T	R	S	A	L	F	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	D	V	I	A	M	T	Y	P	Y	L	F	Q	K	P	I	R	N	S	V	F	C	N	K	D	D	C	L	K	L	E	D	Y	L	I	V	I	D	E	A	H	N	L	L	E	A	D	K	W	F	T	R	K	I	S	R	K	M	L	E	R	A	L
Template Known Secondary structure		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G		S						T					S								S		S	S	T	T	S			G	G	G						T	T	G	G	G	G	G	G	G	G	G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.															.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
														326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																																.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																																.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L	A	V	Y	R	A	H	S	E	Q	I	P	I	I	L	G	S	A	T	P	A	L	E	T	L	C	N	V	Q	Q	K	K	Y	R	L	L	R	L	T	R	R	A	G	N	A	R	P	A	I	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																																.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																																.	.	.	.	.
Template Conservation
Template Sequence		K	E	I	E	I	V	E	R	L	N	R	I	D	A	K	K	V	K	D	Y	I	N	L	L	I	D	Y	M	S	K	L	I	K	D	G	R	C	H	E	L	S	L	M	P	L	P	D	R	E	T	N	G	E	L	I	V	V	T	R	A	Y	L	N	I	D	E	G	P	V	K	K	S	S	L	K	S	L	L	K	F
Template Known Secondary structure										T	T																				T	S			S	S	S					S																						T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
				389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Q	H	V	L	D	L	K	G	Q	K	V	Q	A	G	L	A	P	A	L	I	T	R	M	R	Q	H	L	Q	A	D	N	Q	V	I	L	F	L	N	R	R	G	F	A	P	A	L	L	C	H	D	C	G	W	I	A	E	C	P	R	C	D	H	Y	Y	T	L	H	Q	A	Q	H	H	L	R	C	H	H	C
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		V	E	M	K	G	D	L	Y	N	C	N	G	S	L	V	K	V	P	S	D	V	N	Q	L	I	E	D	A	L	N	V	K	T	F	K	V	L	M	S	G	T	L	P	E	S	L	T	L	T	N	S	Y	K	I	V	V	N	E	S	G	R	G	E	Y	Y	Y	C	P	N	V	T	S	E	L	R	K	R	N	S	N
Template Known Secondary structure				S								T	T							S										T			S	S							S	S			T	T				T	T																		T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	S	Q	R	P	V	P	R	Q	C	P	S	C	G	S	T	H	L	V	P	V	G	L	G	T	E	Q	L	E	Q	T	L	A	P	L	F	P	G	V	P	I	S	R	I	D	R	D	T	T	S	R	K	G	A	L	E	Q	Q	L	A	E	V	H	R	G	G	A	R	I	L	I	G	T	Q	M	L	A	K	.	.
Query Conservation																																																																																.	.
Alig confidence																																													.	.	.	.	.	.																														.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		I	P	I	Y	S	I	L	L	K	R	I	Y	E	N	S	S	K	S	V	L	V	F	F	P	S	Y	E	M	L	E	S	V	R	I	H	L	S	G	I	P	V	I	E	.	.	.	.	.	.	E	N	K	K	T	R	H	E	E	V	L	E	L	M	K	T	G	K	Y	L	V	M	L	V	M	L	F	E	S	L	V
Template Known Secondary structure															T		S	S							S										T	T		T	T	S					.	.	.	.	.	.	S	T	T	T												T	S
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.							.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
				545	.	.	.	.	550	.	.	.	.	.	.						.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.		.	.	.	.	.	.
Predicted Secondary structure		.	.													.	.	.	.	.																																				.
Query SS confidence		.	.													.	.	.	.	.																																				.
Query Sequence		.	.	G	H	H	F	P	D	V	T	L	V	A	L	.	.	.	.	.	L	D	V	D	G	A	L	F	S	A	D	F	R	S	A	E	R	F	A	Q	L	Y	T	Q	V	A	G	R	A	G	R	A	G	K	Q	.	G	E	V	V	L	Q
Query Conservation		.	.													.	.	.	.	.																																				.
Alig confidence		.	.													.	.	.	.	.																																				.
Template Conservation
Template Sequence		L	A	G	L	P	Y	P	N	V	S	D	D	M	V	R	K	R	I	E	R	L	S	K	L	T	G	K	D	E	D	S	I	I	H	D	L	T	A	I	V	I	K	Q	T	I	G	R	A	F	R	D	P	N	D	Y	V	K	I	Y	L	C
Template Known Secondary structure				S						T	T	S															T																									S	T	T
Template Predicted Secondary structure
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.