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Job DescriptionP17888
Confidence100.00%DateWed Jan 25 15:20:40 GMT 2012
Rank32Aligned Residues258
% Identity19%Templatec2v6jA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:rna helicase; PDBTitle: kokobera virus helicase: mutant met47thr
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   218.220.........230......... 240.........250.........260.........270.........280.........290......
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Query Sequence  SAWLLAGVTGSGKTEVYLSVLE. NVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGE
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Template Sequence  ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASETYEALR. . . GEPIRY. . . . . . . . . . . . . . . . . . MGN
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TTS
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   3......10.........20.........30.........40.........50.. ...... .60.
 
   297..300.........310... ......320.........330.........340.........350.........360.........370
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Query Sequence  AAIVIGTRSALFTPFKN. . . . . . LGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQK
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Template Sequence  EIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLD. . . . . PASVAARGYIETRVSMGDAGAIFMTATPPG. . . . . . . . .
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   71........80.........90.........100...... ...110.........120.........130......
 
   371........380.........390.........400.........410.........420.........430.........440.........450
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Query Sequence  KYRLLRLTRRAGNARPAIQHVLDLKGQKVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
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Template Sequence  . . . . . TTEAFPPSNSPIIDEETRIPDKAWNSGYEWI. . . . . . . . TEFDGRTVWFVHSI. . . . . . . . . . . . . . . . . . . . . .
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   137..140.........150.........160....... ..170.........180.
 
   451........460.........470.........480.........490.........500.........510.........520.........530
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Query Sequence  YYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KQGAEIGTCLQKAGKKVLYLNRKT. . . . FESEYPKCKS
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TTT....ST
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   182.......190.........200..... ....210.....
 
   531........540......... 550.........560.........570.........580......... 590...
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Query Sequence  GGARILIGTQMLAKGHHFP. . . . . . . . . . . . . . . . DVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAG. KQGE
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Template Sequence  EKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPAS. . . . . . . . . . . . AAQRRGRIGRNPEKLGD
Template Known Secondary structure  S

S
GGGTTS




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   216...220.........230.........240.........250.........260...... ...270.........280...
 
   594.....600...
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Query Sequence  VVLQTHHPEH
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Template Sequence  IYAYSGNVSS
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S



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   284.....290...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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