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Job DescriptionP17888
Confidence100.00%DateWed Jan 25 15:20:40 GMT 2012
Rank5Aligned Residues327
% Identity17%Templatec2v1xB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   198.200.........210.........220.........230.........240.........250.........260.........270.......
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Query Sequence  RLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLH
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Template Sequence  KFRPLQLETINVTMA. . . . GKEVFLVMPTGGGKSLCYQLPA. . . LCSDGFTLVICPLISLMEDQLMVLKQL. GISATMLN
Template Known Secondary structure  S

TTT....T



TTS

T...SSSS
S
.T


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   91........100..... ....110.........120....... ..130.........140.........150.... .....160..
 
   278.280.........290.. .......300.........310 .........320.........330.........340...
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Query Sequence  SGLNDSERLSAWLKA. . KNGEAAIVIGTRSALFTP. . . . . . . . . . . . FKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVY
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Template Sequence  ASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHD. FRPDYKALGIL
Template Known Secondary structure  SS


TT




TS
TT
TGGGGSTTSTT.

GGGGGG
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   163......170.........180.........190.........200.........210.........220.........230 .........240.
 
   344.....350.........360......... 370.........380.........390.........400.........410.........420.
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Query Sequence  RAHSEQIPIILGSATPALETLCNVQQ. . KKYRLLRLTRRAGNARPAIQHVLDLKGQKVQAGLAPALITRMRQHLQADNQV
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Template Sequence  KRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDF. . . . IEDIVKLINGRYKGQSG
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TTSSS

TT

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TT

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   242.......250.........260.........270.........280.........290.........300 .........310.......
 
   422.......430.........440.........450.........460.........470.........480.........490.........500.
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Query Sequence  ILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPL
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Template Sequence  IIYCFSQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KDSEQVTVS
Template Known Secondary structure 
SS................................................................
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   318.320.... .....330...
 
   502.......510.........520.........530.........540.........550.........560.........570.........580.
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Query Sequence  FPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQV
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Template Sequence  LQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMEN. . . . . . . . . . . . YYQE
Template Known Secondary structure  TT


TTS
TTSSS
TTS
TT


TTSS

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   334.....340.........350.........360.........370.........380.........390....... ..400.
 
   582.......590.........600.........610...
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Query Sequence  AGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKG
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Template Sequence  SGRAGRDDMKADCILYYGFGDIFRISSMVVME
Template Known Secondary structure  TTS
TTSS

TTTS
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   402.......410.........420.........430...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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