Job Description P17888 Confidence 100.00% Date Wed Jan 25 15:20:40 GMT 2012 Rank 23 Aligned Residues 315 % Identity 15% Template c2ocaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase uvsw; PDBTitle: the crystal structure of t4 uvsw Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		S	G	E	R	L	R	L	N	T	E	Q	A	T	A	V	G	A	I	H	S	A	A	D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K	T	E	V	Y	L	S	V	L	E	N	V	L	A	.	Q	G	K	Q	A	L	V	M	V	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E	R	F	N	A
Query Conservation																																																					.
Alig confidence																						.	.	.	.																												.
Template Conservation																						.	.	.	.
Template Sequence		G	N	K	R	I	E	P	H	W	Y	Q	K	D	A	V	F	E	G	L	V	.	.	.	.	N	R	R	R	I	L	N	L	P	T	S	A	G	R	S	L	I	Q	A	L	L	A	R	Y	Y	L	E	N	Y	E	G	K	I	L	I	I	V	P	T	T	A	L	T	T	Q	M	A	D	D	F	V	D	Y	R	L	F
Template Known Secondary structure		T	T																			.	.	.	.		S								S	T	T	T																	S	S							S	S														T	T	S	S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
					272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure		.	.	.																																								.	.	.	.
Query SS confidence		.	.	.																																								.	.	.	.
Query Sequence		.	.	.	P	V	E	V	L	H	S	G	L	N	D	S	E	R	L	S	A	W	L	K	A	K	N	G	E	A	A	I	V	I	G	T	R	S	A	L	F	T	P	.	.	.	.	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L	A	V	Y	R
Query Conservation		.	.	.																																								.	.	.	.
Alig confidence		.	.	.																		.	.	.	.	.	.	.																.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Template Sequence		S	H	A	M	I	K	K	I	G	G	G	A	S	K	D	D	K	Y	K	N	.	.	.	.	.	.	.	D	A	P	V	V	V	G	T	W	Q	T	V	V	K	Q	P	K	E	W	F	S	Q	F	G	M	M	M	N	D	E	C	H	L	A	T	G	K	S	I	S	S	I	.	.	.	.	.	.	.	.	.	I	S
Template Known Secondary structure			G	G	G					G	G	G			T	T	G	G	G		T	.	.	.	.	.	.	.	T		S										T	T	S		G	G	G	G	G	G								T	G	G	G										.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.								.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.										.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.																		.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	H	S	E	Q	I	P	I	I	L	G	S	A	T	P	A	L	E	T	L	C	N	V	Q	Q	K	K	Y	R	L	L	R	L	T	R	R	A	G	N	A	R	P	A	I	Q	H	V	L	D	L	K	G	Q	K	V	Q	A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	A	L
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	N	N	C	M	F	K	F	G	L	S	G	S	L	R	D	G	K	A	N	I	M	Q	Y	V	G	M	F	G	E	I	F	K	P	V	T	T	S	E	L	K	I	N	S	I	F	L	R	Y	P	D	E	F	T	T	K	L	K	G	K	T	Y	Q	E	E	I	K	I	I	T	G	L	S	K	R	N	K	W	I
Template Known Secondary structure		G		T	T									S		G	G	G		S	S											S																												T	T												T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	R	M	R	Q	H	L	Q	A	D	N	Q	V	I	L	F	L	N	R	R	G	F	A	P	A	L	L	C	H	D	C	G	W	I	A	E	C	P	R	C	D	H	Y	Y	T	L	H	Q	A	Q	H	H	L	R	C	H	H	C	D	S	Q	R	P	V	P	R	Q	C	P	S	C	G	S	T	H	L	V	P	V
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	L	A	I	K	L	A	Q	K	D	E	N	A	F	V	M	F	K	H	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	T								S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		G	L	G	T	E	Q	L	E	Q	T	L	A	P	L	F	P	G	V	P	I	S	R	I	D	R	D	T	T	S	R	K	G	A	L	E	Q	Q	L	A	E	V	H	R	G	G	A	R	.	I	L	I	G	T	Q	M	L	A	K	G	H	H	F	P	D	V	T	L	V	A	L	L	D	V	D	G	A	L	F	S	A
Query Conservation																																																	.
Alig confidence		.	.	.	.	.																																											.																																.
Template Conservation		.	.	.	.	.																																																																											.
Template Sequence		.	.	.	.	.	S	H	G	K	A	I	F	D	L	I	K	N	E	Y	D	K	V	Y	Y	V	S	G	E	V	D	T	E	T	R	N	I	M	K	T	L	A	E	N	G	K	G	I	I	I	V	A	S	Y	G	V	F	S	T	G	I	S	V	K	N	L	H	H	V	V	L	A	H	G	V	K	S	K	I	I	.
Template Known Secondary structure		.	.	.	.	.												T	T		S	S					S	S	S	T	T																S													S					S							S	S				S				.
Template Predicted Secondary structure		.	.	.	.	.																																																																											.
Template SS confidence
							358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	R	S	A	E	R	F	A	Q	L	Y	T	Q	V	A	G	R	A	G	R	A	G	K	Q	G	E	V	V	L	Q	T	H	H	P	E	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	V	L	Q	T	I	G	R	V	L	R	K	H	G	S	K	T	I	A	T	V	W	D	L	I	D	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.										T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions