Job Description P17888 Confidence 98.21% Date Wed Jan 25 15:20:40 GMT 2012 Rank 156 Aligned Residues 134 % Identity 15% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K	T	E	V	Y	L	S	V	L	E	N	V	L	A	Q	G	K	Q	A	L	V	M	V	.	.	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E	R	F	N	A	P	V	E	V	L	H	S	G	L	N	D	S	E	R	L	S	A	W	L	K	A
Query Conservation																																								.	.
Alig confidence																																								.	.																																					.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	.	.	.	.
Template Known Secondary structure			S	S									T	T	S	S															T	T										S	S																T								T	T										.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	G	E	A	A	I	V	I	G	T	R	S	A	L	F	T	P	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L	A	V	Y	R	A	H	S	E	Q	I	P	I	I	L	G	S	A	T	P	A	L	E	T	L	C	N	V	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	.	.	.	.	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.									T		S										S	S																		.	.	.	.		S								S	S	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
														172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions