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Job DescriptionP17888
Confidence100.00%DateWed Jan 25 15:20:40 GMT 2012
Rank35Aligned Residues347
% Identity17%Templatec2hxyC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:probable atp-dependent rna helicase ddx48; PDBTitle: crystal structure of human apo-eif4aiii
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   157..160.........170.........180.........190.........200.........210.........220.........230......
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Query Sequence  TLEFNDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLS
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Template Conservation   
 
   
   
   
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Template Sequence  TMGLREDLLRGIYAYGF. . . . . . . . . . . . . . . . . . . . . . . EKPSAIQQRAIKQIIK. . . . GRDVIAQSQSGTGKTATFSI
Template Known Secondary structure  GGT

T
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S

....T



SSS
TT
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   42.......50........ .60.........70.... .....80.........90....
 
   237..240.... .....250.........260......... 270.........280.........290.........300.........310
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Query Sequence  VLENVLAQ. . . GKQALVMVPEIGLTPQTIARFRERF. . . NAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTP
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Template Conservation    
  
         


 
   
  
    
                                                
Template Sequence  SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR
Template Known Secondary structure  S

TTS
S


S
SGGG




SSS
S
TT
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   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   311........320.........330.........340.........350.........360.........370.........380.........390
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Query Sequence  FKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQH
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Template Conservation                                                                                  
Template Sequence  SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF
Template Known Secondary structure 
S

TT

TTTT
TTS
SS
S


TTTTS
SS

SS



B
TT
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   175....180.........190.........200.........210.........220.........230.........240.........250....
 
   391........400.........410.........420.........430.........440.........450.........460.........470
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Query Sequence  VLDLKGQKVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQHHLRCHHCDSQR
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Template Sequence  FVAVEREEWK. . . . . FDTLCDLYDTLTITQAVIFCNTK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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ST.....TTS

S
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   255....260.... .....270.........280.......
 
   471........480.........490.........500.........510.........520.........530.........540.........550
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Query Sequence  PVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . RKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQ
Template Known Secondary structure  ......................TT




TTS
TS
S
S

SSSS
S

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   288.290.........300.........310.........320.........330.........340.....
 
   551........560.........570.........580.........590.........600.........610.
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Query Sequence  VTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLY
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Template Sequence  VSLIINYDLPNNREL. . . . . . . . . . . . YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ
Template Known Secondary structure 
SSS

SSTTT............
B
SSS






GGG
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   346...350.........360 .........370.........380.........390....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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