Job Description P17888 Confidence 99.96% Date Wed Jan 25 15:20:40 GMT 2012 Rank 49 Aligned Residues 263 % Identity 18% Template c2f55C_ PDB info PDB header:hydrolase/dna Chain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna Resolution 3.30 Å

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		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K	T	E	V	Y	L	S	V	L	E	N	V	L	A	Q	G	K	Q	A	L	V	M	V	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E	R	F	N	A	P	V	E	V	L	H	S	G	L	N	D	S	E	R	L	S	A	W	L	K	A	K	N
Query Conservation
Alig confidence																									.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	.	.	.	Y	A	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	I	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	.	.	.	.	R	T	I	T
Template Known Secondary structure		S	S		B								S	S	S	S	T	T	T	T	S				.	.	.			T	T	S								S		S														S	S								S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.												.	.	.	260
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		G	E	A	A	I	V	I	G	T	R	S	A	L	F	T	P	.	.	.	.	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L	A	V	Y	R	A	H	S	E	Q	I	P	I	I	L	G	S	A	T	P	A	L	E	T	L	C	N	V	Q	Q	K
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.																																.	.	.	.	.	.	.	.
Template Sequence		T	G	G	S	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	.	.	.	.	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	.	.	.	.	.	.	.	.	G	S
Template Known Secondary structure					S												T	T	S	S	S	T	T			S					T	T	T	T			.	.	.	.	S											T	T	S	S	T	T	T	T									S	S		T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																					.	.	.	.																																.	.	.	.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.					.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.									.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	R	L	L	R	L	T	R	R	A	G	N	A	R	P	A	I	Q	H	V	L	D	L	K	G	Q	K	V	Q	A	G	L	A	P	A	L	I	T	R	M	R	Q	H	L	Q	A	D	N	Q	V	I	L	F	L	N	R	R	G	F	A	P	A	L	L	C	H	D	C	G	W	I	A	E	C	P	R	C	D	H
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	V	P	H	P	N	I	E	E	I	G	L	S	N	N	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	G	R	H	L	I	F	C	H	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T		B						S		S	S				T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	B						S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.																360	.	.	.	.	.	.	.	.	.	370	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	T	L	H	Q	A	Q	H	H	L	R	C	H	H	C	D	S	Q	R	P	V	P	R	Q	C	P	S	C	G	S	T	H	L	V	P	V	G	L	G	T	E	Q	L	E	Q	T	L	A	P	L	F	P	G	V	P	I	S	R	I	D	R	D	T	T	S	R	K	G	A	L	E	Q	Q	L	A	E	V	H	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	C	D	E	L	A	A	K	L	T	G	L	G	L	N	A	V	A	Y	Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.	.	P	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T						B		S	S	S		T	T		S	.	.	.	.	.	.	.		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Template SS confidence
																																												372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400								.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.																		.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	A	R	I	L	I	G	T	Q	M	L	A	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	H	F	P	D	V	T	L	V	A	L	L	D	V	D	G	A	L	F	S	A	D	F	R	S	A	E	R	F	A	Q	L	Y	T	Q	V	A	G	R	A	G	R	A	G	K	Q	G	E
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		I	G	D	V	V	V	V	A	T	D	A	L	F	T	G	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	.	.	.	.	.	.	.	.	.	.	.	.	R	S	Q	R	R	G	R	T	G	R	.	G	R	S	G	I
Template Known Secondary structure		S	S	S	B						S								S														B				S	S	S		B									B				.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	S		S	.	S	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.													.	.	.	.	.	460	.	.	.	.		.	.	.	.	.
		594	.	.	.	.	.	600	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	L	Q	T	H	H	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	F	V	T	P	G	E	R
Template Known Secondary structure					S		S	S		B
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions