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Job DescriptionP17888
Confidence100.00%DateWed Jan 25 15:20:40 GMT 2012
Rank15Aligned Residues339
% Identity19%Templatec2db3D_
PDB info PDB header:hydrolase/rnaChain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  LEFNDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSV
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Template Sequence  ADLRDIIIDNVNKSGY. . . . . . . . . . . . . . . . . . . . . . . KIPTPIQKCSIPVISS. . . . GRDLMACAQTGSGKTAAFLLP
Template Known Secondary structure  S


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   250.........260..... ....270.........280. ........290.........300..
 
   238.240.. .......250.........260......... 270.........280.........290.........300......
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Query Sequence  LENVL. . . . . . . . AQGKQALVMVPEIGLTPQTIARFRERF. . . NAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSA
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Template Sequence  ILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR. . . . GCHVVIATPGR
Template Known Secondary structure  S



BTTB
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   303......310.........320.........330.........340.........350.........360....... ..370........
 
   307..310 .........320.........330.........340.........350.........360.........370.........
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Query Sequence  LFTP. . . . . . . FKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTR
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Template Sequence  LLDFVDRTFITFEDTRFVVLDEADRML. . . DMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAI
Template Known Secondary structure  TSS

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   379380.........390.........400..... ....410.........420.........430.........440.........450.....
 
   380.........390.........400.........410.........420.........430.........440.........450.........
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Query Sequence  RAGNARPAIQHVLDLKGQKVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQH
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Template Sequence  GIVGGACSDVKQTIYEVNKYA. . . . . KRSKLIEILSEQADGTIVFVETK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSTT


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   456...460.........470...... ...480.........490.........
 
   460.........470.........480.........490.........500.........510.........520.........530.........
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Query Sequence  HLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGT
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT
Template Known Secondary structure  .................................TTT


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   500.........510.........520.........530.........540......
 
   540.........550.........560.........570.........580.........590..... ....600.........610.
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Query Sequence  QMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVV. LQTHHPEHPLLQTLLY
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Template Sequence  SVASRGLDIKNIKHVINYDMPSKIDD. . . . . . . . . . . . YVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK
Template Known Secondary structure  GGGSSS


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   547..550.........560.........570.. .......580.........590.........600.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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