Job Description P17888 Confidence 99.91% Date Wed Jan 25 15:20:40 GMT 2012 Rank 59 Aligned Residues 368 % Identity 13% Template c1z63A_ PDB info PDB header:hydrolase/dna complex Chain: A: PDB Molecule:helicase of the snf2/rad54 hamily; PDBTitle: sulfolobus solfataricus swi2/snf2 atpase core in complex2 with dsdna Resolution 3.00 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		V	S	G	E	R	L	R	L	N	T	E	Q	A	T	A	V	G	A	I	H	S	A	A	D	T	F	S	A	W	L	L	A	G	V	T	G	S	G	K	T	E	V	Y	L	S	V	L	E	N	V	L	A	Q	G	K	.	.	Q	A	L	V	M	V	P	E	I	G	L	T	P	Q	T	I	A	R	F	R	E	R	F
Query Conservation																																																									.	.
Alig confidence																																																									.	.									.
Template Conservation																																																																			.
Template Sequence		P	Y	N	I	K	A	N	L	R	P	Y	Q	I	K	G	F	S	W	X	R	F	X	N	K	L	G	F	G	I	C	L	A	D	D	X	G	L	G	K	T	L	Q	T	I	A	V	F	S	D	A	K	K	E	N	E	L	T	P	S	L	V	I	C	P	L	.	S	V	L	K	N	W	E	E	E	L	S	K	F	A
Template Known Secondary structure				S		S	S																			T	T									T	T	S																T	T			S	S							S	.	T	T
Template Predicted Secondary structure																																																																			.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.		.	.	.	.	.	.	.	.	510	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		N	A	P	V	E	V	L	H	S	G	L	N	D	S	E	R	L	S	A	W	L	K	A	K	N	G	E	A	A	I	V	I	G	T	R	S	A	L	.	.	.	.	F	T	P	F	K	N	L	G	V	I	V	I	D	E	E	H	D	S	S	Y	K	Q	Q	E	G	W	R	Y	H	A	R	D	L	A	V	Y	R	A
Query Conservation																																								.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																		.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		P	H	L	R	F	A	V	F	H	E	D	R	S	.	.	.	.	.	.	.	.	K	I	K	L	E	D	Y	D	I	I	L	T	T	Y	A	V	L	L	R	D	T	R	L	K	E	V	E	W	K	Y	I	V	I	D	E	A	Q	N	I	K	N	P	Q	T	K	.	.	.	.	.	.	.	.	I	F	K	A	V	K
Template Known Secondary structure		T	T	S						S	S	S	T	T	.	.	.	.	.	.	.	.	S			G	G	G	S	S										T	T						T										T	G	G	G	G	S		T	T	S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.									.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.									.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360																																									.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	S	E	Q	I	P	I	I	L	G	S	A	T	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	T	L	C	N	V	Q	Q	K	K	Y	R	L	L	R	L	T	R	R	A	G	N	A	R
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	K	S	K	Y	R	I	A	L	T	G	T	P	I	E	N	K	V	D	D	L	W	S	I	X	T	F	L	N	P	G	L	L	G	S	Y	S	E	F	K	S	K	F	A	T	P	I	K	K	G	D	N	X	A	K	E	E	L	K	A	I	I	S	P	F	I	L	R	R	T	K	Y	D	K	A	I	I	N	D
Template Known Secondary structure		T	S										S	S		S	T	T													S	T	T	T	T								T	T	T						T	T													T	T	T						T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	I	Q	H	V	L	D	L	K	G	Q	K	V	Q	A	G	L	A	P	A	L	I	T	R	M	R	Q	H	L	Q	A	D	N	Q	V	I	L	F	L	N	R	R	G	F	A	P	A	L	L	C	H	D	C	G	W	I	A	E	C	P	R	C	D	H	Y	Y	T	L	H	Q	A	Q	H	H	L	R	C	H	H
Query Conservation
Alig confidence														.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		L	P	D	K	I	E	T	N	V	Y	C	N	.	.	.	.	.	L	T	P	E	Q	A	A	X	Y	K	A	E	V	E	N	L	F	N	N	I	D	S	V	T	G	I	K	R	K	G	X	I	L	S	T	L	L	K	L	K	Q	I	V	D	H	P	A	L	L	K	G	G	E	Q	S	V	R	R	S	G	K	X	I
Template Known Secondary structure		S		S										.	.	.	.	.																	T	T	T	T	T	T			T																		T	T		T						S				S	T	T
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		660	.	.	.	.	.	.	.	.	.	670	.						.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		C	D	S	Q	R	P	V	P	R	Q	C	P	S	C	G	S	T	H	L	V	P	V	G	L	G	T	E	Q	L	E	Q	T	L	A	P	L	F	P	G	V	P	I	S	R	I	D	R	D	T	T	S	R	K	G	A	L	E	Q	Q	L	A	E	V	H	.	R	G	G	A	R	I	L	I	G	T	Q	M	L	A	K
Query Conservation																																																																		.
Alig confidence																																							.	.	.																									.
Template Conservation																																							.	.	.
Template Sequence		R	T	X	E	I	I	E	E	A	L	D	E	G	D	K	I	A	I	F	T	Q	F	V	D	X	G	K	I	I	R	N	I	I	E	K	E	L	.	.	.	N	T	E	V	P	F	L	Y	G	E	L	S	K	K	E	R	D	D	I	I	S	K	F	Q	N	N	P	S	V	K	F	I	V	L	S	V	K	A	G	F
Template Known Secondary structure												T	T	T								S																	.	.	.	T								T	T	S																T	T
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.				.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	H	F	P	D	V	T	L	V	A	L	L	D	V	D	G	A	L	F	S	A	D	F	R	S	A	E	R	F	A	Q	L	Y	T	Q	V	A	G	R	A	G	R	A	G	K	Q	G	E	V	V	L	Q	T	H
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	N	L	T	S	A	N	R	V	I	H	F	D	R	W	W	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	Q	A	T	D	R	V	Y	R	I	G	Q	T	R	N	V	I	V	H	K	L
Template Known Secondary structure						T	T		S					S	S			S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	T	T	T	T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830																.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.