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Job DescriptionP17888
Confidence99.97%DateWed Jan 25 15:20:40 GMT 2012
Rank44Aligned Residues270
% Identity18%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   215....220.........230.........240.........250.........260.........270.........280.........290....
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Query Sequence  DTFSAWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKN
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Template Sequence  QSFQVAHLHAPTGSGKSTKVPAA. . . YAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGV. . . . . . . . . . . RTIT
Template Known Secondary structure  SS


TTS
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   195....200.........210....... ..220.........230.........240.........250...... ...260
 
   295....300........ .310.........320.........330.........340.........350.........360.........370.
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Query Sequence  GEAAIVIGTRSALF. . . TPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKK
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Template Sequence  TGSPITYSTYGKFLADGGSGGAYDIIICDECHST. . . . DATSILGIGTVLDQAETAGARLVVLATATP. . . . . . . . . . . .
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STT





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   261........270.........280.........290.... .....300.........310.........320....
 
   372.......380.........390.........400.........410.........420.........430.........440.........450.
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Query Sequence  YRLLRLTRRAGNARPAIQHVLDLKGQKVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHY
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Template Sequence  . . . . . . PGSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIK. . . . . GGRHLIFCHSK. . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ......TT





TT

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   326...330.........340.........350.........360 .........370.
 
   452.......460.........470.........480.........490.........500.........510.........520........
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Query Sequence  YTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEV. . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVA
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TTS
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   372.......380.........390.........400.........410
 
   529530.........540...... ...550.........560.........570.........580.........590.........600..
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Query Sequence  . . . . HRGGARILIGTQMLAKGH. . HFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPE
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Template Sequence  TDALFTGDFDSVIDCNTVTQTVDFSLDPTFTIETTTLPQDAVS. . . . . . . . . . . . RTQRRGRTGR. GKPGIYRFVAPGER
Template Known Secondary structure 
TT




BS






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B............TTB
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   411........420.........430.........440.........450... ......460... ......470.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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