Job Description P0A8I8 Confidence 96.03% Date Thu Jan 5 11:07:57 GMT 2012 Rank 7 Aligned Residues 135 % Identity 15% Template d1p9pa_ SCOP info alpha/beta knot alpha/beta knot tRNA(m1G37)-methyltransferase TrmD Resolution 2.50

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50															.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	L	Q	L	V	A	V	G	T	K	M	P	D	W	V	Q	T	G	F	T	E	Y	L	R	R	.	.	F	P	K	D	M	P	F	E	L	I	E	I	P	A	G	K	R	G	K	N	A	D	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	L	D	K	E	G	E	Q	M	L	A	A	A
Query Conservation																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		M	W	I	G	I	I	S	L	.	.	F	P	E	M	F	R	A	I	T	D	Y	G	V	T	G	R	A	V	K	N	G	L	L	S	I	Q	S	W	S	P	R	D	F	T	H	D	R	H	R	T	V	D	D	R	P	Y	G	G	G	P	G	M	L	M	M	V	Q	P	L	R	D	A	I	H	A	A	K	A	A	A
Template Known Secondary structure									S	.	.		G	G	G	G					S	S									T	T	S								G	G	G	G			S	T	T								T	T			S	S
Template Predicted Secondary structure										.	.
Template SS confidence
		1	.	.	.	.	.	.	.			.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		65	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure					.																																																.																.
Query SS confidence					.																																																.																.
Query Sequence		G	K	N	.	R	I	V	T	L	D	I	P	G	K	P	W	D	T	P	Q	L	A	A	E	L	E	R	W	K	L	D	G	R	D	V	S	L	L	I	G	G	P	E	G	L	S	P	A	C	K	A	.	A	A	E	Q	S	W	S	L	S	A	L	T	L	P	H	.	P	L	V	R	V	L	V	A	E	S	L	Y
Query Conservation					.																																																.																.
Alig confidence					.																						.	.	.	.	.																						.																.
Template Conservation																											.	.	.	.	.
Template Sequence		G	E	G	A	K	V	I	Y	L	S	P	Q	G	R	K	L	D	Q	A	G	V	S	E	L	A	.	.	.	.	.	T	N	Q	K	L	I	L	V	C	G	R	Y	E	G	I	D	E	R	V	I	Q	T	E	I	D	E	E	W	S	I	G	D	Y	V	L	S	G	G	E	L	P	A	M	T	L	I	D	S	V	S
Template Known Secondary structure			T	T																							.	.	.	.	.	T		S									T	T												S					S	S	S	S			S		S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		142
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		154

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions