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Job DescriptionP19642
Confidence45.78%DateThu Jan 5 11:37:27 GMT 2012
Rank6Aligned Residues438
% Identity13%Templated1xmea1
SCOP infoCytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20..... ....30.........40.........50.........60.........70.........80.........90....
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Query Sequence  QQLGKTFMLP. VALLSFCGIMLGIGSSLSSHDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENK
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Template Sequence  KKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPAREL
Template Known Secondary structure  TTTT


STT


T
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   18.20.........30.........40.........50.........60.........70.........80.........90.......
 
   95.. ..100.........110.........120.........130.........140.........150.........160.........170..
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Query Sequence  GVA. . AFAGFIGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPD
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Template Sequence  NMRPNMGLMWLSWWMAFIGLVVAALPLLANEATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWRRWKAANPGK
Template Known Secondary structure  T



TTS

STTTT
TTB


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   98.100.........110.........120.........130.........140.........150.........160.........170.......
 
   173......180.........190.... .....200.........210.....
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Query Sequence  ALAFFGGTRFVPIISSLVMGLV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLVIPLVWPIFAMGISGLGHM
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Template Sequence  VTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPKQAGG
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TTS
S
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   178.180.........190.........200.........210.........220.........230.........240.........250.......
 
   216...220.........230.........240.... .....250.........260.........270.........280...
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Query Sequence  INSAGDFGPMLFGTGERLLLPFGLHHILV. . . ALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFS. . . . . . . . .
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Template Sequence  KLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIR
Template Known Secondary structure 
BS
SSTTGGGG
TT
SSS
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   258.260.........270.........280.........290.........300.........310.........320.........330.......
 
   284.....290.........300.........310.........320 .........330......... 340....
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Query Sequence  . . . . . ESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK. . . . . IKGLLISGLIACVVGGTTE. . PLEFL. . . . . . .
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Template Sequence  ALPWDNPAFVAPVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQ
Template Known Secondary structure  S
TT
TSGGGTTBTTTTT




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   338.340.........350.........360.........370.........380.........390.........400.........410.......
 
   345....350.........360.........370.........380.........390.........400.........410.........420..
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Query Sequence  . . FLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRF
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Template Sequence  RRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAY. . . . . . PHAAVPMVFNVLAGIVLLVALLLFIYGLFSV
Template Known Secondary structure  TT
BSS

GGGSGGG
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   418.420.........430.........440.........450.........460 .........470.........480.........490.
 
   423......430.........440.........450.........460
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Query Sequence  NLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALG
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Template Sequence  LLSRE. RKPELAEAPLPFAEVISGPEDRRLVLAMDRIG
Template Known Secondary structure  T


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   492.... ...500.........510.........520........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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