Job Description P19642 Confidence 100.00% Date Thu Jan 5 11:37:27 GMT 2012 Rank 1 Aligned Residues 418 % Identity 15% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		1	.	.	.	.	.	.				.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		M	T	A	K	T	A	P	.	.	.	K	V	T	L	W	E	F	F	Q	Q	L	G	K	T	F	M	L	P	V	A	L	L	S	F	C	G	I	M	L	G	I	G	S	S	L	S	S	H	D	V	I	T	L	I	P	V	L	G	N	P	V	L	Q	A	I	F	T	W	M	S	K	I	G	S	F	A	F	S	F	L
Query Conservation									.	.	.
Alig confidence									.	.	.																																										.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		L	E	K	Y	V	M	P	V	A	G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	.	.	.	.	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M
Template Known Secondary structure		S	T	T	T	S																					G	G	G	T	T													T				T	T	T	T	T	.	.	.	.						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	M	F	C	I	A	I	P	L	G	L	A	R	E	N	K	G	V	A	A	F	A	G	F	I	G	Y	A	V	M	N	L	A	V	N	F	W	L	T	N	K	G	I	L	P	T	T	D	A	A	V	L	K	A	N	N	I	Q	S	I	L	G	I	Q	S	I	D	T	G	I	L	G	A	V	I	A	G	I	I
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		A	L	I	A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	.	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I
Template Known Secondary structure																		T	S																	S		S							T	T	T	S							S	.				T	T	T	T	T	T	T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.						.	.	.	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.															.	.	.
Query SS confidence																																																	.	.	.	.	.															.	.	.
Query Sequence		V	W	M	L	H	E	R	F	H	N	I	R	L	P	D	A	L	A	F	F	G	G	T	R	F	V	P	I	I	S	S	L	V	M	G	L	V	G	L	V	I	P	L	V	W	P	I	.	.	.	.	.	F	A	M	G	I	S	G	L	G	H	M	I	N	S	.	.	.	A	G	D	F	G	P	M	L	F	G	T
Query Conservation																																																	.	.	.	.	.															.	.	.
Alig confidence																																																	.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I
Template Known Secondary structure								T	T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	R	L	L	L	P	F	G	L	H	H	I	L	V	A	L	I	R	F	T	D	A	G	G	T	Q	E	V	C	G	Q	T	V	S	G	A	L	T	I	F	Q	A	Q	L	S	C	P	T	T	H	G	F	S	E	S	A	T	R	F	L	S	Q	G	K	M	P	A	F	L	G	G	L	P	G	A	A	L	A	M
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	H	V	L	W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	.	.	.	.	.	.	.	.	.	.	.	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M
Template Known Secondary structure									T	T	S						T															.	.	.	.	.	.	.	.	.	.	.							T	T						S										T	S		S	S	S	S	S	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.												270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.				.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		Y	H	C	A	R	P	E	N	R	H	K	I	K	G	L	L	I	S	G	L	I	A	C	V	V	G	G	T	T	E	P	L	E	F	L	F	L	F	V	A	P	V	L	Y	V	I	H	A	L	L	T	G	L	G	F	T	V	M	S	V	L	G	V	T	I	G	N	.	.	.	T	D	G	N	I	I	D	F	V	V
Query Conservation																																																																					.	.	.
Alig confidence																.	.	.	.																																																		.	.	.
Template Conservation																.	.	.	.
Template Sequence		L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	.	.	.	.	L	S	I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T
Template Known Secondary structure							S									.	.	.	.		T	S					T	T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		387	.	.	390	.	.			.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		F	G	I	L	H	G	.	.	L	S	T	K	W	Y	M	V	P	V	V	A	A	I	W	F	V	V	Y	Y	V	I	F	R	F	A	I	T	R	F	N	L	K	T	P	G	R	D	S	E	V	A	S	S	I	E
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q	L	V	N	F	A	L	A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E	N
Template Known Secondary structure										T	T	T	T		T	T	T																															T	T
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.