Return to main results Retrieve Phyre Job Id

Job DescriptionP19642
Confidence100.00%DateThu Jan 5 11:37:27 GMT 2012
Rank1Aligned Residues418
% Identity15%Templatec3qnqD_
PDB info PDB header:membrane protein, transport proteinChain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Resolution3.29 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1...... ..10.........20.........30.........40.........50.........60.........70.......
Predicted Secondary structure 






...

















Query SS confidence 






. . .





































































Query Sequence  MTAKTAP. . . KVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFL
Query Conservation         ...
      

 

 
 



 

  






                           
   
   
  
Alig confidence 






...








































....
























Template Conservation            
      
 

   
   

 

  

   
          ....             
       
  
Template Sequence  LEKYVMPVAGKVAEQRHLLAIRDGLVLTMPFLIIGSIFLIISTLPIPGYSE. . . . FMASLFGKNWNVALGYPVSATFNIM
Template Known Secondary structure  STTTS
GGGTTT


TTTTT....T
S

TTGGGTT
Template Predicted Secondary structure 






....



Template SS confidence 















































































   5....10.........20.........30.........40.........50..... ....60.........70.........80
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 






















Query SS confidence 















































































Query Sequence  PVMFCIAIPLGLARENKGVAAFAGFIGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGII
Query Conservation 





 

   

       
  

            
                      

      

  


 
 
Alig confidence 





















































.
























Template Conservation   
     

   

                                        .       
       

 
 
   
Template Sequence  ALIAVFGIAYRLGEYYKVDALASGALSLVTFLLATPFQVAYIMPGTKESILVDG. VIPAALMGSQGLFVAMIIAIISTEI
Template Known Secondary structure  TS
S
S
TTTS
S.


TTTTTTTT
Template Predicted Secondary structure 













.


Template SS confidence 















































































   81........90.........100.........110.........120.........130.... .....140.........150.........
 
   158.160.........170.........180.........190.........200.... .....210........ .220.........
Predicted Secondary structure 






.....
...

Query SS confidence 














































. . . . .













. . .










Query Sequence  VWMLHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPI. . . . . FAMGISGLGHMINS. . . AGDFGPMLFGT
Query Conservation     
  
   



  
    
  

 

   
  

  
   
   .....
   
  
   
  ...    
  
 
 
Alig confidence 














































.....













...










Template Conservation              

             

   
   
   
           
   
                   
   
Template Sequence  YRFLVQKKMIIKMPETVPPAVTRSFAALIPGFIVVTVVWIIRLIFEHTTFGSIHNVVGKLLQEPLSILGASLWGAVIAVI
Template Known Secondary structure  TT
S



TTS
TSSS
STTTS
Template Predicted Secondary structure 












Template SS confidence 















































































   160.........170.........180.........190.........200.........210.........220.........230.........
 
   230.........240.........250.........260.........270.........280.........290.........300.........
Predicted Secondary structure 
















Query SS confidence 















































































Query Sequence  GERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAM
Query Conservation 
   

 




      
    

     
    
      
                    
      

  

 


Alig confidence 





























...........






































Template Conservation 
   
   


           
       ...........                          

 
  

  

 
Template Sequence  LVHVLWACGIHGATIVGGVMSPIWLSLMDQ. . . . . . . . . . . NRIAFQAGQDVPNTITAQFFDLWIYMGGSGATLALVVGM
Template Known Secondary structure  TTS
T...........TT




S

TS
SSSSST
Template Predicted Secondary structure 


...........




Template SS confidence 















































































   240.........250.........260......... 270.........280.........290.........300........
 
   310.........320.........330.........340.........350.........360.........370...... ...380......
Predicted Secondary structure 






...


Query SS confidence 


































































. . .









Query Sequence  YHCARPENRHKIKGLLISGLIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGN. . . TDGNIIDFVV
Query Conservation     

    
    
   


 
 
 





 
 
 
  
 
  
  

 

   
     
  
 ...  

 
    
Alig confidence 













....
















































...









Template Conservation      
 
  
    .... 
    






  

      

  

 
   
   
                       
Template Sequence  LLFARSQQLKSLGR. . . . LSIAPGIFNINEMVTFGMPIVMNPLLLIPFIVVPVVLTIVSYFAMEWGLVARPSGAAVTWTT
Template Known Secondary structure 

S....TSTT

TT
TT
TTTTTSS



S



TTS
Template Predicted Secondary structure 


....










Template SS confidence 















































































   309310.........320.. .......330.........340.........350.........360.........370.........380....
 
   387..390.. .......400.........410.........420.........430........
Predicted Secondary structure 



..













Query SS confidence 





. .













































Query Sequence  FGILHG. . LSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIE
Query Conservation        ..        





  



  
   
 
 
  




        
Alig confidence 





..













































Template Conservation 
        
       
  

  

   

  
 
   
     
        
Template Sequence  PILFSGYLGSGGKISGVILQLVNFALAFVIYLPFLKIWDKQKIAEEKGEAAAEN
Template Known Secondary structure 
TTTT
TTTTT





Template Predicted Secondary structure 





Template SS confidence 





















































   385....390.........400.........410.........420.........430........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions