Job Description P19642 Confidence 7.67% Date Thu Jan 5 11:37:27 GMT 2012 Rank 55 Aligned Residues 437 % Identity 13% Template c3eh4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus Resolution 2.90 Å

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		16	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.
Predicted Secondary structure												.																																																																	.	.	.
Query SS confidence												.																																																																	.	.	.
Query Sequence		Q	Q	L	G	K	T	F	M	L	P	.	V	A	L	L	S	F	C	G	I	M	L	G	I	G	S	S	L	S	S	H	D	V	I	T	L	I	P	V	L	G	N	P	V	L	Q	A	I	F	T	W	M	S	K	I	G	S	F	A	F	S	F	L	P	V	M	F	C	I	A	I	P	L	G	L	.	.	.	A	R
Query Conservation												.																																																																	.	.	.
Alig confidence												.																																																																	.	.	.
Template Conservation
Template Sequence		K	K	A	T	L	Y	F	L	V	L	G	F	L	A	L	I	V	G	S	L	F	G	P	F	Q	A	L	N	Y	G	N	V	D	A	Y	P	L	L	K	R	L	L	P	F	V	Q	S	Y	Y	Q	G	L	T	L	H	G	V	L	N	A	I	V	F	T	Q	L	F	A	Q	A	I	M	V	Y	L	P	A	R	E	L
Template Known Secondary structure																															T	T											S	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	K	G	V	A	A	F	A	G	F	I	G	Y	A	V	M	N	L	A	V	N	F	W	L	T	N	K	G	I	L	P	T	T	D	A	A	V	L	K	A	N	N	I	Q	S	I	L	G	I	Q	S	I	D	T	G	I	L	G	A	V	I	A	G	I	I	V	W	M	L	H	E	R	F	H	N	I	R	L	P
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		N	M	R	P	N	M	G	L	M	W	L	S	W	W	M	A	F	I	G	L	V	V	A	A	L	P	L	L	A	.	N	E	A	T	V	L	Y	T	F	Y	P	P	L	K	G	H	W	A	F	Y	L	G	A	S	V	F	V	L	S	T	W	V	S	I	Y	I	V	L	D	L	W	R	R	W	K	A	A	N	P	G
Template Known Secondary structure		T					T	T																						T	.	T	S			S		T	T			T	T	B																																			S	T	T
Template Predicted Secondary structure																															.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.																																						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	L	A	F	F	G	G	T	R	F	V	P	I	I	S	S	L	V	M	G	L	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	I	P	L	V	W	P	I	F	A	M	G	I	S	G	L	G	H
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	T	P	L	V	T	Y	M	A	V	V	F	W	L	M	W	F	L	A	S	L	G	L	V	L	E	A	V	L	F	L	L	P	W	S	F	G	L	V	E	G	V	D	P	L	V	A	R	T	L	F	W	W	T	G	H	P	I	V	Y	F	W	L	L	P	A	Y	A	I	I	Y	T	I	L	P	K	Q	A	G
Template Known Secondary structure																																T							S	S		S																T																	T						T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																	.	.	.																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.																																						.	.	.	.	.	.	.	.	.
Query Sequence		M	I	N	S	A	G	D	F	G	P	M	L	F	G	T	G	E	R	L	L	L	P	F	G	L	H	H	I	L	V	A	.	.	.	L	I	R	F	T	D	A	G	G	T	Q	E	V	C	G	Q	T	V	S	G	A	L	T	I	F	Q	A	Q	L	S	C	P	T	T	H	G	F	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.																																						.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	L	V	S	D	P	M	A	R	L	A	F	L	L	F	L	L	L	S	T	P	V	G	F	H	H	Q	F	A	D	P	G	I	D	P	T	W	K	M	I	H	S	V	L	T	L	F	V	A	V	P	S	L	M	T	A	F	T	V	A	A	S	L	E	F	A	G	R	L	R	G	G	R	G	L	F	G	W	I
Template Known Secondary structure		S			S		T	T													S	S	T	T	G	G	G	G		T	T		S	S	S																T																					T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
							283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320						.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																							.	.	.	.	.																				.	.						.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																							.	.	.	.	.																				.	.						.	.	.	.	.	.
Query Sequence		.	.	.	.	.	S	E	S	A	T	R	F	L	S	Q	G	K	M	P	A	F	L	G	G	L	P	G	A	A	L	A	M	Y	H	C	A	R	P	E	N	R	H	K	.	.	.	.	.	I	K	G	L	L	I	S	G	L	I	A	C	V	V	G	G	T	T	E	.	.	P	L	E	F	L	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																							.	.	.	.	.																				.	.						.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																							.	.	.	.	.																				.	.						.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	L	P	W	D	N	P	A	F	V	A	P	V	L	G	L	L	G	F	I	P	G	G	A	G	G	I	V	N	A	S	F	T	L	D	Y	V	V	H	N	T	A	W	V	P	G	H	F	H	L	Q	V	A	S	L	V	T	L	T	A	M	G	S	L	Y	W	L	L	P	N	L	T	G	K	P	I	S	D	A
Template Known Secondary structure				S		T	T																										S	G	G	G					T	T	B	T										T	T	T									T	T	S	S	T	T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
					345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	F	L	F	V	A	P	V	L	Y	V	I	H	A	L	L	T	G	L	G	F	T	V	M	S	V	L	G	V	T	I	G	N	T	D	G	N	I	I	D	F	V	V	F	G	I	L	H	G	L	S	T	K	W	Y	M	V	P	V	V	A	A	I	W	F	V	V	Y	Y	V	I	F	R	F	A	I	T	R
Query Conservation		.	.	.
Alig confidence		.	.	.																																										.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.
Template Sequence		Q	R	R	L	G	L	A	V	V	W	L	W	F	L	G	M	M	I	M	A	V	G	L	H	W	A	G	L	L	N	V	P	R	R	A	Y	I	A	Q	V	P	D	A	Y	.	.	.	.	.	.	P	H	A	A	V	P	M	V	F	N	V	L	A	G	I	V	L	L	V	A	L	L	L	F	I	Y	G	L	F	S
Template Known Secondary structure																														T	T		B	S	S			G	G	G	S	T	T	S		.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																														.	.	.	.	.	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460							.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	L	K	T	P	G	R	D	S	E	V	A	S	S	I	E	K	A	V	A	G	A	P	G	K	S	G	Y	N	V	P	A	I	L	E	A	L	G
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		V	L	L	S	R	E	R	K	P	E	L	A	E	A	P	L	P	F	A	.	E	V	I	S	G	P	E	D	R	R	L	V	L	A	M	D	R	I	G
Template Known Secondary structure				T		S				S	S	T	T	T	S						.						T	T									T
Template Predicted Secondary structure																					.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.