Job Description P19642 Confidence 6.94% Date Thu Jan 5 11:37:27 GMT 2012 Rank 65 Aligned Residues 79 % Identity 14% Template c1u5tB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; PDBTitle: structure of the escrt-ii endosomal trafficking complex Resolution 3.60 Å

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		448	.	450	.	.	.	.	.	.	.	.	.													460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.				.	.	.	480	.	.	.	.	.			.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.										.	.											.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.										.	.											.
Query Sequence		S	G	Y	N	V	P	A	I	L	E	A	L	.	.	.	.	.	.	.	.	.	.	.	.	G	G	A	D	N	I	V	S	L	D	N	C	I	T	R	L	R	.	.	.	L	S	V	K	D	M	S	L	V	.	.	N	V	Q	A	L	K	D	N	R	A	.	I	G	V	V	Q	L	N	Q	H	N	L	Q	V	V
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.										.	.											.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.										.	.											.
Template Conservation
Template Sequence		L	D	E	I	A	R	E	I	Y	E	F	T	L	S	E	F	K	D	L	N	S	D	T	N	Y	M	I	I	T	L	V	D	L	Y	A	M	Y	N	K	S	M	R	I	G	T	G	L	I	S	P	M	E	M	R	E	A	C	E	R	F	E	H	L	G	L	N	E	L	K	L	V	K	V	N	K	R	I	L	C	V
Template Known Secondary structure															T	T	T	T	T	S	S	S									T	T									T	T	T	S	S	S													T	T	T	G	G	G	T			S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	P	Q	V	Q	S	V	K	D	E	M	A	G	L	M	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	E	K	F	D	V	V	K	E	K	L	V	D	L	I	G
Template Known Secondary structure			S	S		S
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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