Job Description P37676 Confidence 98.42% Date Thu Jan 5 11:56:50 GMT 2012 Rank 35 Aligned Residues 208 % Identity 12% Template d2nxoa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.04

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		26	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		Q	S	L	R	F	G	Y	E	T	S	Q	T	D	.	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L
Query Conservation															.
Alig confidence															.							.	.	.	.	.	.	.	.														.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.														.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	R	P	R	V	G	H	I	Q	F	L	N	C	L	P	L	Y	W	G	L	.	.	.	.	.	.	.	.	A	R	T	G	T	L	L	D	F	E	L	T	K	.	.	.	.	D	T	P	E	K	L	S	E	Q	L	V	R	G	D	L	D	I	G	P	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	G	G	G								.	.	.	.	.	.	.	.			T	S	G	G	G	G						.	.	.	.												T	T	S		S						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.														.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.									.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	L	K	G	L	K	I	R	T	N	.	N	S	P	M	N	I	A	A	F	K	V	F
Query Conservation																																																																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																			.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	E	F	L	K	N	A	D	D	L	V	A	F	P	D	I	A	V	G	C	D	G	P	V	M	S	C	V	.	I	V	S	Q	V	P	L	D	R	L	D	G	A	R	V	A	L	G	S	T	S	R	T	S	V	R	L	A	Q	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	G	G	G												S	S			S	S			.				S	S		T	T	S		S	S	S						T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
																					59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
							184	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure		.	.	.	.	.										.	.	.																		.																			.
Query SS confidence		.	.	.	.	.										.	.	.																		.																			.
Query Sequence		.	.	.	.	.	G	A	N	P	I	P	M	P	F	.	.	.	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	.	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	.	L	T	H	H	A	Y	S	P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q
Query Conservation		.	.	.	.	.										.	.	.																		.																			.
Alig confidence		.	.	.	.	.										.	.	.																		.																			.
Template Conservation
Template Sequence		L	S	E	R	F	G	V	Q	P	D	Y	Y	T	C	P	P	D	L	S	L	M	A	A	V	L	I	G	D	A	A	L	R	A	N	M	I	D	G	P	R	Y	G	L	D	V	H	D	L	G	A	L	W	K	E	W	T	G	L	P	F	V	F	A	V	W	A	A	R	R	D	Y	A	E	R	E	P	V	I	T	R
Template Known Secondary structure					T	S													S	S																	T					T	T															S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		K	V	H	.	E	A	F	L	A	S	R	N	L	S	L	E	E	V	E	K	V	A	E	Q	A	A	R
Template Known Secondary structure					.													T										T
Template Predicted Secondary structure					.
Template SS confidence
		204	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions