Job Description P37676 Confidence 84.48% Date Thu Jan 5 11:56:50 GMT 2012 Rank 69 Aligned Residues 244 % Identity 15% Template d1r9la_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.59

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	A	Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M
Query Conservation
Alig confidence														.	.	.																												.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																												.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Sequence		P	G	K	G	I	T	V	N	P	V	Q	S	.	.	.	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	.	.	.	.	.	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	T									.	.	.	S		G	G	G														T	T								.	.	.	.	.														T	S	S									.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.																												.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	L	D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	.	.	.	.	.	.	V	K	T	P	A	D	L	K	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T							T	T	G	G	G	T					S		S																			T			B	G	G	G	G	G	S					G	G	G		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
			165	.	.	.	.	170	.	.	.	.								.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.											.	.	.	.	.	.	.													.	.	.	.						.	.	.	.																			.	.
Query SS confidence		.											.	.	.	.	.	.	.													.	.	.	.						.	.	.	.																			.	.
Query Sequence		.	G	L	K	I	R	T	N	N	S	P	.	.	.	.	.	.	.	M	N	I	A	A	F	K	V	F	G	A	N	.	.	.	.	P	I	P	M	P	.	.	.	.	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	.	.	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L
Query Conservation		.											.	.	.	.	.	.	.													.	.	.	.						.	.	.	.																			.	.
Alig confidence		.											.	.	.	.	.	.	.													.	.	.	.						.	.	.	.																			.	.
Template Conservation
Template Sequence		G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L
Template Known Secondary structure		S	S	S	S								T	T	S													T	T		T	T	T						S															T	T										S	S	S					S		B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		227	.	.	230	.	.	.	.																					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	T	H	H	A	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	K	E	A	G
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.										.	.	.	.	.	.	.	.	.
Template Conservation																																													.										.	.	.	.	.	.	.	.	.
Template Sequence		Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	.	A	A	A	K	L	F	A	I	M	.	.	.	.	.	.	.	.	.	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K
Template Known Secondary structure		B		S	S				T	T		T	T				B		T	T	S		B		S	S		S																	.										.	.	.	.	.	.	.	.	.																	T
Template Predicted Secondary structure																																													.										.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.										.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		287	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		V	E	V	I	T	D	L	D	.	R	K	A	F	S	D	A	L	G	N	Q	V	R	D	M	F	V	K
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G	W	V	N	E
Template Known Secondary structure			S															T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions