Job Description P37676 Confidence 98.53% Date Thu Jan 5 11:56:50 GMT 2012 Rank 33 Aligned Residues 202 % Identity 19% Template c3tqwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii Resolution 2.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L	D	V	P
Query Conservation
Alig confidence																				.	.	.																			.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.																			.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	V	G	T	I	A	G	P	E	T	Q	L	X	E	V	A	K	.	.	.	Q	V	A	L	N	R	Y	G	L	H	V	N	I	I	T	F	S	D	.	.	.	.	.	Y	N	T	P	N	E	A	L	A	D	G	S	V	D	A	N	X	F	Q	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T											.	.	.																	S		.	.	.	.	.	T	T	S							T	T	S		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.																			.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																											.										.	.	.	.
Query SS confidence																																																											.										.	.	.	.
Query Sequence		F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	L	K	.	G	L	K	I	R	T	N	N	S	.	.	.	.	P	M	N	I	A	A	F	K	V
Query Conservation																																																											.										.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.										.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	L	K	A	Q	I	E	X	R	G	Y	K	I	V	S	I	G	K	T	F	V	Y	P	X	G	L	Y	S	K	K	I	T	A	L	T	Q	L	K	T	G	A	K	I	A	V	P	S	D	P	S	N	E	A	R	A	L	L	L	L	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														S	S		S	S	G	G	G			T	T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		183	.	.																				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S	P	L	L	V	V	I	N	K	A
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	L	I	Q	L	K	T	H	I	N	A	T	P	X	D	I	A	S	N	P	K	K	L	K	I	V	E	L	D	A	A	Q	L	S	R	S	L	G	D	V	D	L	A	A	I	N	T	N	Y	A	I	P	A	G	L	S	P	S	R	D	A	L	L	T	E	G	P	N	S	P	Y	A	N	V	V	A	V	R	E
Template Known Secondary structure		T	T	S											G	G	G					T	T									G	G	G	G	G	G		T	T	T		S										G	G	G	T			T	T	T	T		S					S	S	S	S									G
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	.	A	Q	E	A	G	N	Y	Q	R	K	L	V
Query Conservation																		.
Alig confidence			.															.
Template Conservation			.
Template Sequence		D	.	D	K	N	D	P	R	L	K	Q	L	V	S	A	L	H	S	P	A	V	L	S	A	A	K	K	I	F
Template Known Secondary structure		G	.	G	T	T												T	S
Template Predicted Secondary structure			.
Template SS confidence
		203		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions