Job Description P37676 Confidence 97.08% Date Thu Jan 5 11:56:50 GMT 2012 Rank 40 Aligned Residues 238 % Identity 16% Template c3r6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis Resolution 1.61 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																							.																																											.
Query SS confidence																							.																																											.
Query Sequence		Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	.	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	.	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L
Query Conservation																							.																																											.
Alig confidence										.	.	.											.																			.	.	.	.																					.
Template Conservation										.	.	.																														.	.	.	.
Template Sequence		Q	T	I	K	I	G	A	Q	.	.	.	S	M	S	E	S	E	I	I	A	S	M	L	G	Q	L	I	E	H	H	T	D	L	K	T	T	T	I	K	N	.	.	.	.	L	G	S	N	A	V	Q	Q	Q	A	L	M	N	G	E	I	D	I	A	A	T	R	Y	T	G	D	A	L	T	G	T	L	R	M	E	P
Template Known Secondary structure										.	.	.	S	S																		S	S									.	.	.	.			S										T	T	S		S														T	T
Template Predicted Secondary structure										.	.	.																														.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.
Predicted Secondary structure																																		.																						.	.	.	.	.	.											.	.	.	.
Query SS confidence																																		.																						.	.	.	.	.	.											.	.	.	.
Query Sequence		L	D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	.	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	.	.	.	.	.	.	V	K	T	P	A	D	L	K	G	L	.	.	.	.	K	I	R	T	N	N
Query Conservation																																		.																						.	.	.	.	.	.											.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																						.	.	.	.	.	.											.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	A	L	A	L	T	Q	R	E	F	K	K	R	Y	D	L	K	W	Y	D	S	Y	G	F	D	N	T	Y	A	F	T	V	S	K	E	L	A	D	Q	Y	H	L	E	T	V	S	D	V	K	K	W	A	P	Q	L	K	L	G	V	D	N
Template Known Secondary structure				S		.	.	.	.	.	.	.	.	.	.	.	.	.	.																								S		B																T			B	S	G	G	G	G	G	G	G	G	G							T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.															.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		173	.	.							.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.
Predicted Secondary structure					.	.	.	.	.	.													.	.	.																																																			.	.
Query SS confidence					.	.	.	.	.	.													.	.	.																																																			.	.
Query Sequence		S	P	M	.	.	.	.	.	.	N	I	A	A	F	K	V	F	G	A	N	P	.	.	.	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S	P	L	L	.	.	V	V	I	N
Query Conservation					.	.	.	.	.	.													.	.	.																																																			.	.
Alig confidence					.	.	.	.	.	.													.	.	.																																		.	.																.	.
Template Conservation																																																											.	.
Template Sequence		Y	W	M	K	L	K	G	N	G	Y	Q	D	F	T	K	T	Y	G	M	T	F	G	G	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	S	G	K	M	D	I	V	L	A	Y	S	T	D	G	R	I	K	S	Y	G	.	.	L	K	M	L	K	D	D	K	Q	F	F	P	P	Y	D	C	S	P	V	V	P
Template Known Secondary structure		T	G	G	G		S	S	S	S													S							G	G	G								T	S		S						T	T							T	T	.	.					B		T	T			S				B
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.								.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.
Query Sequence		K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	.	.	.	.	.	.	.	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	K	E	A	G
Query Conservation																	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	V	L	K	E	H	P	E	L	E	G	I	I	K	K	M	L	G	K	I	D	T	A	T	M	Q	E	L	N	Y	E	V	D	G	N	L	K	E	P	S	V	V	A	K	E	Y	L	E	K	H	R
Template Known Secondary structure								S	T	T							T	T	T	T																T	S															T	G
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions