Job Description P37676 Confidence 96.77% Date Thu Jan 5 11:56:50 GMT 2012 Rank 45 Aligned Residues 239 % Identity 14% Template c3pppA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc Resolution 2.40 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	.	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L
Query Conservation																							.
Alig confidence									.	.	.												.																			.	.	.	.																			.	.	.	.	.	.
Template Conservation									.	.	.																															.	.	.	.																			.	.	.	.	.	.
Template Sequence		D	T	I	K	I	G	A	.	.	.	Q	S	M	T	E	S	E	I	V	A	N	M	I	A	Q	L	I	E	H	D	T	D	L	N	T	A	L	V	K	N	.	.	.	.	L	G	S	N	Y	V	Q	H	Q	A	M	L	G	G	D	I	D	I	.	.	.	.	.	.	S	A	T	R	Y	S	G	T	D	L	T	S
Template Known Secondary structure									.	.	.		S	S																			S									.	.	.	.			S										T	T	S		S		.	.	.	.	.	.												T
Template Predicted Secondary structure									.	.	.																															.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.							.	.	.	90	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.																						.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query SS confidence																																	.																						.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query Sequence		D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	.	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	.	.	.	.	.	.	V	K	T	P	A	D	L	K	G	L	K	I	.	.	.	.	.	.	.	.	.
Query Conservation																																	.																						.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.															.																						.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		T	L	G	K	E	A	E	K	D	P	.	.	.	.	.	.	.	K	K	A	L	N	I	V	Q	N	E	F	Q	K	R	F	S	Y	K	W	F	D	S	Y	G	F	D	N	T	Y	A	F	T	V	T	K	K	F	A	E	K	E	H	I	N	T	V	S	D	L	K	K	N	A	S	Q	Y	K	L	G	V	D	N	A
Template Known Secondary structure		T	S									.	.	.	.	.	.	.																								S		B																T		S	B	G	G	G	G	G	G	G	G	G	G							T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.								.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
						169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.
Predicted Secondary structure		.	.	.	.																																																																						.	.
Query SS confidence		.	.	.	.																																																																						.	.
Query Sequence		.	.	.	.	R	T	N	N	S	P	M	N	I	A	A	F	K	V	F	G	A	N	P	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S	P	L	L	.	.	V	V	I	N	K
Query Conservation		.	.	.	.																																																																						.	.
Alig confidence		.	.	.	.																																																					.	.																.	.
Template Conservation																																																										.	.
Template Sequence		W	L	K	R	K	G	D	G	Y	K	G	F	V	S	T	Y	G	F	E	F	G	T	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	N	G	K	M	D	A	V	L	A	Y	S	T	D	G	R	I	K	A	Y	D	.	.	L	K	I	L	K	D	D	K	R	F	F	P	P	Y	D	C	S	P	V	I	P	E
Template Known Secondary structure		T	T	T		S	S	S	S													S							G	G	G							T	T	S		S						T	T		T					T	T	.	.					B		T	T			S				B
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.								.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence		A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	.	.	.	.	.	.	.	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	K	E	A	G
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	L	K	E	H	P	E	L	E	G	V	I	N	K	L	I	G	Q	I	D	T	E	T	M	Q	E	L	N	Y	E	V	D	G	K	L	K	E	P	S	V	V	A	K	E	F	L	E	K	H	H
Template Known Secondary structure							S	T	T							T	T	T	T																T	S															T	G
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions