Job Description P37676 Confidence 98.83% Date Thu Jan 5 11:56:50 GMT 2012 Rank 23 Aligned Residues 254 % Identity 15% Template c3n5lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		S	L	R	F	G	Y	E	T	S	Q	T	.	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L	D
Query Conservation													.
Alig confidence													.																														.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	N	F	G	I	I	S	T	E	S	S	Q	N	L	K	S	I	W	E	P	F	L	K	D	X	S	Q	Q	T	G	Y	Q	V	K	A	F	F	A	P	D	.	.	.	.	.	Y	A	G	I	I	Q	G	X	R	F	D	K	V	D	I	A	W	Y	G	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	S																					S	S								S	S	.	.	.	.	.										T	T	S		S								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.																	.	.	.	.													.
Query SS confidence																																											.	.	.	.	.	.																	.	.	.	.													.
Query Sequence		V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	.	.	.	.	.	.	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	.	.	.	.	L	K	G	L	K	I	R	T	N	N	S	P	.
Query Conservation																																											.	.	.	.	.	.																	.	.	.	.													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																	.	.	.	.													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	X	E	A	V	D	R	A	H	G	E	I	F	A	Q	T	V	A	A	S	G	A	P	G	Y	W	S	L	L	I	A	N	K	D	S	K	I	D	S	L	E	D	X	L	A	N	A	K	S	L	T	F	G	N	G	D	P	N	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S											T	T			S										T	T		S			S							T	G	G	G								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
								175	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.														.	.	.	.	.	.	.																																							.	.	.	.
Query SS confidence		.	.	.	.	.	.														.	.	.	.	.	.	.																																							.	.	.	.
Query Sequence		.	.	.	.	.	.	M	N	I	A	A	F	K	V	F	G	A	N	P	.	.	.	.	.	.	.	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	.	.	.	.	L	S	L	T	H	H	A	Y	S	P	L	L
Query Conservation		.	.	.	.	.	.														.	.	.	.	.	.	.																																							.	.	.	.
Alig confidence		.	.	.	.	.	.														.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation
Template Sequence		T	S	G	Y	L	V	P	G	Y	Y	V	F	A	K	N	N	V	D	P	V	K	A	F	K	R	T	L	N	S	S	H	E	V	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	F	N	T	E	G	X	E	R	L	E	L	T	Q	P	E	K	A	R	Q	L	K	V	I	W	K	S	P	L	I	P	G	D	P
Template Known Secondary structure		T	T	T	T							T	T	T	T	T	T							S	S																T	T	S	S	S																					T	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	K	E	A	G	V	E	V	I	T	D	L	D	R	K	A	F	S	D	A	.	L	G	N	Q	V	R	D	M	F	V	K	D	V	P	Q
Query Conservation																																																																		.
Alig confidence								.	.	.	.																			.	.	.	.	.	.																															.
Template Conservation								.	.	.	.																			.	.	.	.	.	.
Template Sequence		L	V	W	R	N	N	.	.	.	.	L	S	D	E	Q	K	N	K	L	R	D	F	F	F	K	Y	G	A	.	.	.	.	.	.	N	A	E	Q	K	K	V	L	A	D	L	Q	W	S	K	F	Q	A	S	D	D	D	Q	L	L	P	I	R	Q	L	E	L	F	K	Q	R	T	D	V	A	N	N	A	N	L	G
Template Known Secondary structure						T	T	.	.	.	.	S																		.	.	.	.	.	.	S										T	T									G	G	G	G																			T	T	S
Template Predicted Secondary structure								.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		317	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	D	L	L	K	A	V	D	E	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	E	K	A	A	K	L	K	A	L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions