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Job DescriptionP37676
Confidence89.48%DateThu Jan 5 11:56:50 GMT 2012
Rank61Aligned Residues181
% Identity16%Templatec3mplA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e)
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70.........80.........90.........100.........110.........120.....
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Query Sequence  KFNDLLQERTKGELKLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTLDGKVG
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Template Sequence  AVLQLLQLRTGLDFEIIGVDT. . . . . VEELIAKLRSGEADMAGALEVNSA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   335....340.........350..... ....360.........370.........
 
   126...130.........140.........150... ......160.........170.........180...... ...190.........200
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Query Sequence  DDLKASLEGKGLKVLAYWENGWRDVTNS. . RAPVKTPADLKGLKIRTNNSPMNIAAFKVFGAN. . . PIPMPFAEVYTGLE
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Template Sequence  . . . . . . . RESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVA
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   380.........390.........400.........410.........420.........430.........440.........450..
 
   201........210....... ..220.........230.........240.........250.........260.........270...
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Query Sequence  TRTIDAQEHPINVVWSA. . . KFFEVQKFLSLTHHAYSPLLVVINKAKFDGLSPEFQQALVSSAQEAGNYQRKLVAE
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Template Sequence  NGQADAVVETQISASYYVNRYFAGKLRIASALDLPPAEIALATTRG. . . . . QTELMSILNKALYSISNDELASIIS
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   453......460.........470.........480.........490........ .500.........510.........520...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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