Job Description P37676 Confidence 41.70% Date Thu Jan 5 11:56:50 GMT 2012 Rank 114 Aligned Residues 178 % Identity 8% Template c3i6vA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein; PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L	D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G
Query Conservation
Alig confidence																									.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	G	D	E	L	C	K	R	A	G	L	T	C	E	W	V	K	N	D	W	D	S	.	.	.	.	.	.	I	I	P	N	L	V	S	G	N	Y	D	T	I	I	A	G	M	S	I	T	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T										G	G	G	.	.	.	.	.	.							T	T	S		S				S	S		B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	L	K	G	L	K	I	R	T	N	N	S	P	M	N	I	A	A	F	K	V	F	G	A	N	P	I	P	M	P	.	F	A	E	V	Y	T	G	L	E	T	R	T	I
Query Conservation																																																																				.
Alig confidence		.	.	.	.	.	.	.																									.	.	.	.																																.
Template Conservation		.	.	.	.	.	.	.																									.	.	.	.
Template Sequence		.	.	.	.	.	.	.	R	D	E	V	I	D	F	T	Q	N	Y	I	P	P	T	A	S	S	Y	V	A	T	S	D	.	.	.	.	G	A	D	L	S	G	I	V	A	A	Q	T	A	T	I	Q	A	G	Y	I	A	E	S	G	A	T	L	V	E	F	A	T	P	E	E	T	I	A	A	V	R	N	G	E	A
Template Known Secondary structure		.	.	.	.	.	.	.			T	T	S																	S	S	T	.	.	.	.	T			T	T	S						T	T	S									S	S	S						S	S										T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																									.	.	.	.
Template SS confidence
									124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.
Predicted Secondary structure															.	.																																																	.	.
Query SS confidence															.	.																																																	.	.
Query Sequence		D	A	Q	E	H	P	I	N	V	V	W	S	A	.	.	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S	P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E	A	G	N	.	.	Y	Q	R	K	L	V	A	E	D
Query Conservation															.	.																																																	.	.
Alig confidence															.	.																											.	.	.	.	.																		.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		D	A	V	F	A	D	R	D	Y	L	V	P	I	V	A	E	S	G	G	E	L	M	F	V	G	D	D	V	P	L	G	G	G	V	G	M	G	L	R	E	S	.	.	.	.	.	D	G	E	L	R	G	K	F	D	A	A	I	T	S	M	K	E	D	G	T	L	N	T	M	I	K	K	W
Template Known Secondary structure		S																T	T	T	S	S										S	S								T	T	.	.	.	.	.																		T	S
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.						.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions