Job Description P37676 Confidence 98.82% Date Thu Jan 5 11:56:50 GMT 2012 Rank 24 Aligned Residues 200 % Identity 16% Template c3gxaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 Resolution 2.25 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L	D
Query Conservation
Alig confidence											.	.	.																														.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.																														.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	I	V	F	G	T	T	V	.	.	.	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	V	K	L	V	E	F	T	D	.	.	.	.	.	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	.	.	.	T									T							T	T	T									S	S	.	.	.	.	.	S	S									T	S		S								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.																														.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180
Predicted Secondary structure																																																													.											.	.	.	.
Query SS confidence																																																													.											.	.	.	.
Query Sequence		V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	L	K	.	G	L	K	I	R	T	N	N	S	P	.	.	.	.	M	N	I	A	A	F
Query Conservation																																																													.											.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.											.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	L	D	D	F	K	K	E	H	N	L	D	I	T	E	V	F	Q	V	P	T	A	P	L	G	L	Y	P	G	K	L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T											B								S	S				G	G	G			T	T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		181	.	.	.																									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	P	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S	P	L
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																			.
Template Conservation																																													.	.																			.
Template Sequence		D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R	S	R	.	.	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	.	K	L	T	E	A	L	F	Q	E	P	S	F	A	Y	V	N
Template Known Secondary structure				T	T	S	S				T	T			G	G	G			G	G	G					T	T									G	G	G					T	.	.	T	T	S	S												T	T		.		G	G	G		S							T	T
Template Predicted Secondary structure																																													.	.																			.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	.	S	A	Q	E	A	G	N	Y	Q	R	K	L	V
Query Conservation																								.
Alig confidence									.	.														.
Template Conservation									.	.
Template Sequence		W	S	A	V	K	T	A	.	.	D	K	D	S	Q	W	L	K	D	V	T	E	A	Y	N	S	D	A	F	K	A	Y	A	H	K	R	F
Template Known Secondary structure							G	G	.	.	G	T	T											T	T	S											S
Template Predicted Secondary structure									.	.
Template SS confidence
		239	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions