Job Description P37676 Confidence 100.00% Date Thu Jan 5 11:56:50 GMT 2012 Rank 4 Aligned Residues 299 % Identity 28% Template c3fxbB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of the ectoine-binding protein ueha Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L	D
Query Conservation
Alig confidence																																						.	.
Template Conservation																																						.	.
Template Sequence		D	T	W	R	Y	A	F	E	E	A	M	T	D	V	Q	G	V	Y	A	Q	K	F	K	E	E	I	E	A	N	S	D	H	E	I	Q	L	.	.	F	P	Y	G	T	L	G	E	S	A	D	I	M	E	Q	T	Q	D	G	I	L	Q	F	V	D	Q	S	P	G	F	T	G	S	L	I	P	E	A	Q	V	F	F
Template Known Secondary structure									S	S		S	S	S																S	S	S						.	.			T	T	S	S		S											T	S		S										T	T	T	S	G	G	G	G	G	G	G
Template Predicted Secondary structure																																						.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	.	.	.	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	L	K	G	L	K	I	R	T	N	N	S	P	M	N	I	A	A	F	K	V
Query Conservation																	.	.	.
Alig confidence																	.	.	.																																	.
Template Conservation																																																				.
Template Sequence		V	P	Y	L	L	P	T	D	Q	D	H	L	A	R	F	F	K	E	S	K	A	I	N	D	M	F	K	P	L	Y	A	D	Q	G	L	E	L	L	N	M	F	P	E	G	E	V	A	M	T	T	.	K	T	P	V	T	T	C	S	D	L	D	E	V	K	F	R	V	M	T	N	P	L	L	V	E	S	Y	K	A
Template Known Secondary structure		S	T	T		S		S																	T	T	S						T	T	T																	.	S	S			S	S	G	G	G	S	T	T							S
Template Predicted Secondary structure																																																				.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	A	N	P	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S	P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	A	T	P	T	P	L	P	W	G	E	V	Y	G	G	L	Q	T	N	V	I	Q	G	Q	E	N	P	T	F	F	L	Y	S	T	K	I	Y	E	V	T	D	Y	I	T	Y	A	G	H	N	N	F	T	T	A	V	M	A	N	K	D	F	Y	D	G	L	S	A	E	D	Q	Q	L	V	Q	N	A	A	L	A
Template Known Secondary structure			T	S							G	G	G							T	T	S														T	T	G	G	G	S																										S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.								.	.
Query SS confidence																						.	.								.	.
Query Sequence		A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	.	.	K	E	A	G	V	E	V	.	.	I	T	D	L	D	R	K	A	F	S	D	A	L	G	N	Q	V	R	D	M	F	V	K	D	V	P	Q	G	A	D	L	L	K	A	V	D	E	V
Query Conservation																						.	.								.	.
Alig confidence																						.	.								.	.
Template Conservation
Template Sequence		A	Y	D	H	T	V	V	Y	Q	Q	Q	A	A	D	T	E	L	A	K	I	M	E	A	K	P	E	M	Q	V	T	V	L	T	D	E	Q	R	S	C	F	K	E	A	A	A	E	V	E	A	K	F	I	E	M	T	G	D	S	G	A	A	I	L	K	Q	M	K	A	D
Template Known Secondary structure															T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions