Return to main results Retrieve Phyre Job Id

Job DescriptionP37676
Confidence70.70%DateThu Jan 5 11:56:50 GMT 2012
Rank86Aligned Residues184
% Identity13%Templatec3delC_
PDB info PDB header:protein binding, transport proteinChain: C: PDB Molecule:arginine binding protein; PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis
Resolution1.92 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70.........80.........90.........100.........110.........120.....
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  KFNDLLQERTKGELKLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTLDGKVG
Query Conservation   

  
 
 
 
 
 
     
 

        
  
 

             
      

                  
Alig confidence 






















......























...........................
Template Conservation 

   
   

            ......          
             ...........................
Template Sequence  DLAREISNKLGKTLDVREFSFDA. . . . . . LILNLKQHRIDAVITGMSITPSRL. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T


GGG......TTSSS
SSBB

...........................
Template Predicted Secondary structure 






......









...........................
Template SS confidence 















































































   62.......70.........80.... .....90.........100........
 
   126...130.........140.........150.........160.........170.........180.........190 .........200...
Predicted Secondary structure 




















..



Query SS confidence 
































































. .












Query Sequence  DDLKASLEGKGLKVLAYWENGWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAFKVFGANPIPM. . PFAEVYTGLETRT
Query Conservation            
   
     
         

 
  



 


   
          

 

  ..   

  

  
 
Alig confidence  .......

























































..












Template Conservation  .......                                                                    
  

Template Sequence  . . . . . . . KEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSLSEVHIRSFDSTLEVLMEVMHGK
Template Known Secondary structure  .......TTSSS

S



GGGSS
TTSSTT

SSTTS
Template Predicted Secondary structure  .......












































Template SS confidence 















































































   109110.........120.........130.........140.........150.........160.........170.........180.
 
   204.....210..... ....220.........230.........240.........250.........260..... ....270....
Predicted Secondary structure 

....
















..
Query SS confidence 











. . . .

















































. .








Query Sequence  IDAQEHPINVVW. . . . SAKFFEVQKFLSLTHHAYSPLLVVINKAKFDGLSPEFQQALVSSAQEAGN. . YQRKLVAED
Query Conservation 


         ....     

  
              

      
  
 
  
  
      ..         
Alig confidence 











....



























.....
















..








Template Conservation   
                                        
 .....   
   

  
  
   
    
  

Template Sequence  SPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD. . . . . RPALALKIEAAVQEIRKEGVLAELEQKW
Template Known Secondary structure  SS
GGG
TT

GGG

TT.....
TT
Template Predicted Secondary structure 



























.....


Template SS confidence 












































































   182.......190.........200.........210.........220..... ....230.........240.........250...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions