Job Description P37676 Confidence 100.00% Date Thu Jan 5 11:56:50 GMT 2012 Rank 8 Aligned Residues 299 % Identity 20% Template c2zzxD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate Resolution 1.75 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	W	R	I	Q	T	A	W	D	A	G	T	V	G	Y	S	L	F	Q	K	F	T	E	R	V	K	E	L	T	D	G	Q	L	E	V	Q	P	F	P	A	G	A	V	V	G	T	F	D	M	F	D	A	V	K	T	G	V	L	D	G	M	N	P	F	T	L	Y	W	A	G	R	M	P	V	T	A	F	L	S
Template Known Secondary structure									S	S		T	T	S																	T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S					B	G	G	G	G	T	T	T		G	G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		3034	.	.	.	.	.	3040	.	.	.	.	.	.	.	.	.	3050	.	.	.	.	.	.	.	.	.	3060	.	.	.	.	.	.	.	.	.	3070	.	.	.	.	.	.	.	.	.	3080	.	.	.	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.	3100	.	.	.	.	.	.	.	.	.	3110	.	.	.
		106		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure			.																										.
Query SS confidence			.																										.
Query Sequence		V	.	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	.	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	L	K	G	L	K	I	R	T	N	N	S	P	M	N	I	A	A	F	K	V	F
Query Conservation			.																										.
Alig confidence			.																										.																						.																		.
Template Conservation																																																			.																		.
Template Sequence		S	Y	A	L	G	L	D	R	P	D	Q	W	E	T	W	F	Y	S	L	G	G	L	D	I	A	R	R	A	F	A	E	Q	G	L	F	Y	V	G	P	V	Q	H	D	L	N	I	I	H	S	.	K	K	P	I	R	R	F	E	D	F	K	G	V	K	L	R	V	.	P	G	G	M	I	A	E	V	F	A	A	A
Template Known Secondary structure				T	T	S			S										T	S	S											T	T	T																	.	S	S				S	G	G	G	G	T	T						.		S										T
Template Predicted Secondary structure																																																			.																		.
Template SS confidence
		3114	.	.	.	.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.	.	.	.	.	.	.	3140	.	.	.	.	.	.	.	.	.	3150	.	.	.	.	.	.	.	.	.	3160	.	.		.	.	.	.	.	.	.	3170	.	.	.	.	.	.	.	.	.		3180	.	.	.	.	.	.	.	.	.	3190	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.								.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																													.																								.	.	.	.	.	.	.
Query SS confidence																													.																								.	.	.	.	.	.	.
Query Sequence		G	A	N	P	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	.	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A	Y	.	.	.	.	.	.	.	S	P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A
Query Conservation																													.																								.	.	.	.	.	.	.
Alig confidence																													.																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	S	T	V	L	L	P	G	G	E	V	Y	P	A	L	E	R	G	V	I	D	A	A	D	F	V	G	P	A	V	N	Y	N	L	G	F	H	Q	V	A	K	Y	I	I	M	G	P	P	E	T	P	A	I	H	Q	P	V	D	L	M	D	F	T	I	N	L	N	R	W	R	S	L	P	K	P	L	Q	E	R
Template Known Secondary structure		T								G	G	G							T	T	S		S					S								T	T													T	T	S	S		S	S		S	S															S
Template Predicted Secondary structure
Template SS confidence
		3192	.	.	.	.	.	.	.	3200	.	.	.	.	.	.	.	.	.	3210	.	.	.	.	.	.	.	.	.	3220	.	.	.	.	.	.	.	.	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.	.	.	.	.	.	.	3250	.	.	.	.	.	.	.	.	.	3260	.	.	.	.	.	.	.	.	.	3270	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		L	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	K	E	A	G	V	E	V	.	.	I	T	D	L	D	R	K	A	F	S	D	A	L	G	N	Q	V	R	D	M	F	V	K	D	V	P	Q	G	A	D	L	L	K	A	V	D	E	V
Query Conservation																																				.	.
Alig confidence																																				.	.													.
Template Conservation																																																		.
Template Sequence		F	I	A	A	V	H	E	Y	S	W	I	H	Y	A	G	I	Q	K	A	N	L	E	A	W	P	K	Y	R	Q	A	G	V	E	V	I	R	L	S	N	E	D	V	R	K	F	R	R	L	.	A	I	P	I	W	F	K	W	A	K	M	D	K	Y	S	R	E	A	F	A	S	Q	L	E	Y
Template Known Secondary structure																															T	T																		.										T	T	S
Template Predicted Secondary structure																																																		.
Template SS confidence
		3272	.	.	.	.	.	.	.	3280	.	.	.	.	.	.	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.	.	.	.	.	.	.	.	3310	.	.	.	.	.	.	.	.	.		3320	.	.	.	.	.	.	.	.	.	3330	.	.	.	.	.	.	.	.	.	3340	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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