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Job DescriptionP37676
Confidence99.46%DateThu Jan 5 11:56:50 GMT 2012
Rank11Aligned Residues216
% Identity18%Templatec2x26A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40...... ...50.........60.........70.........80.........90.........100.
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Query Sequence  AAQSLRFGYETSQTDSQHIAAKK. . FNDLLQERTKGELKLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVM
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Template Sequence  SPEALRIGYQ. KGSIGMVLAKSHQLLEKR. . . . . YPESKISWVE. . . FPAGPQMLEALNVGSIDLGSTGDI. . . . . . . . .
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   25....30.... .....40.........50.. .......60.. .......70.........80......
 
   102.......110.........120.........130.........140...... ...150.........160.........170........
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Query Sequence  NLLDVPFLFRDTAHAHKTLDGKVGDDLKASLEGKGLKVLAYWENG. . . WRDVTNSRAPVKTPADLKGLKIRTNNSPMNIA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . PPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHN
Template Known Secondary structure  ........................TT




GGGTT
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SGGGGTTS
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   87..90.........100.........110.........120.........130.........140..
 
   179180... ......190.........200.........210.........220.........230.. .......240........
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Query Sequence  AFKVF. . . . . . . . . GANPIPMPFAEVYTGLETRTIDAQEHPINVVWSAKFFEVQKFLSLTHHA. YSPLLVVINKAKFDGL
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Template Sequence  LLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKN
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   143......150.........160.........170.........180.........190.........200.........210.........220..
 
   249250.........260.........270.........280..
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Query Sequence  SPEFQQALVSSAQEAGNYQRKLVAEDQQKIIDGM
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Template Sequence  GAFIQGVL. ATFSEADALTRSQREQSIALLAKTM
Template Known Secondary structure  .T
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   223......230 .........240.........250.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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