Job Description P37676 Confidence 96.93% Date Thu Jan 5 11:56:50 GMT 2012 Rank 42 Aligned Residues 194 % Identity 14% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L
Query Conservation
Alig confidence											.	.	.																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	C	G	T	V	R	F	S	D	.	.	.	V	G	W	T	D	I	T	A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	.	.	.	.	.	.	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S							.	.	.		S		T	T															T	T							.	.	.	.	.	.								T	S	S	T	T	T	T											.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.							.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.	.	.	.	160	.	.	.								.	.	.	.	.	.	170	.
Predicted Secondary structure																																																						.	.	.	.	.									.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.									.	.	.	.	.	.	.
Query Sequence		L	D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	.	.	.	.	.	P	V	K	T	P	A	D	L	.	.	.	.	.	.	.	K	G	L	K	I	R	T	N
Query Conservation																																																						.	.	.	.	.									.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E	T	V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T										T	T																										T			B	T	T	S	S	G	G	G		T	T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.										.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.											.	.	.	.																												.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.											.	.	.	.																												.	.	.	.
Query Sequence		N	S	P	M	N	I	A	A	F	K	V	F	.	.	.	.	.	.	.	.	.	G	A	N	P	I	P	M	P	F	A	.	.	.	.	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	.	.	.	.	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S
Query Conservation														.	.	.	.	.	.	.	.	.											.	.	.	.																												.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.											.	.	.	.																												.	.	.	.
Template Conservation
Template Sequence		P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S	S	E	Q	G	M	L	A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P	H	P	M	N	A	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A
Template Known Secondary structure		S	S											T	T	T	T		T	T		T	T																			T	T	T	T										S	S	G	G	G	G	T	S						B	S			S	S	S		S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	.	N	V	D	K	L	L
Template Known Secondary structure									T	T					S		.
Template Predicted Secondary structure																	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions