Job Description P37676 Confidence 98.57% Date Thu Jan 5 11:56:50 GMT 2012 Rank 32 Aligned Residues 255 % Identity 9% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L
Query Conservation
Alig confidence																																														.	.	.
Template Conservation																																														.	.	.
Template Sequence		N	K	P	L	D	I	I	V	T	F	P	P	G	G	G	T	D	M	L	A	R	L	I	G	N	Y	L	T	E	S	L	G	Q	T	A	V	V	E	N	R	P	G	A	S	.	.	.	G	N	V	G	A	R	L	V	A	D	R	A	P	D	G	Y	S	L	L	M	V	N	S	S	F	A	V	N	P	G	V	F	R
Template Known Secondary structure			S							S	S		T	T	S															T	T	S	S	S										G	G	.	.	.	G									T	S		S	S	S	S							T										S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.							.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																			.											.	.	.	.	.	.												.	.	.
Query SS confidence																																																			.											.	.	.	.	.	.												.	.	.
Query Sequence		D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	.	R	A	P	V	K	T	P	A	D	L	.	.	.	.	.	.	K	G	L	K	I	R	T	N	N	S	P	.	.	.
Query Conservation																																																			.											.	.	.	.	.	.												.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.	.												.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	P	F	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	D	F	A	A	V	I	N	V	A	Y	V	P	S	V	F	V	V	P	A	G	S	K	Y	K	T	L	G	E	L	M	A	A	A	K	Q	T	N	T	Q	V	T	Y	G	S	C	G	N	G	T
Template Known Secondary structure		S		S	S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																		T	T		S			S								T		S	S	S								S	S	T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.																								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
						175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.																.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	M	N	I	A	A	F	K	V	F	G	A	N	P	I	P	M	P	.	.	.	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A
Query Conservation		.	.	.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Q	H	L	A	G	E	L	L	N	V	S	A	K	T	H	M	V	H	V	P	Y	K	G	C	G	P	A	L	N	D	V	L	G	S	Q	I	G	L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G
Template Known Secondary structure															T									S	S										T	T	S	S	S															T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		233	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																																													.	.
Query SS confidence															.	.																																													.	.
Query Sequence		Y	S	P	L	L	V	V	I	N	K	A	K	F	.	.	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	K	E	A	G	V	E	V	.	.	I	T	D	L	D	R	K	A	F	S	D	A	L	G	N	Q	V	R	D
Query Conservation															.	.																																													.	.
Alig confidence															.	.																					.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.
Template Sequence		V	A	G	Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M	Q	.	.	.	.	.	.	.	.	.	R	D	D	V	Q	K	K	L	A	D	L	G	Y	S	T	A	S	D	G	P	E	V	F	Q	K	M	V	E	T	D	I	D	R	F	S	A
Template Known Secondary structure			T	T													T	T	S																		.	.	.	.	.	.	.	.	.												T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.										.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		309	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	V	K	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	K	Q	I	G
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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