Job Description P37676 Confidence 42.13% Date Thu Jan 5 11:56:50 GMT 2012 Rank 113 Aligned Residues 182 % Identity 16% Template c2ieeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574. Resolution 2.20 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L	D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G
Query Conservation
Alig confidence																									.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	V	R	E	A	A	K	R	L	G	L	K	V	E	F	K	E	X	G	I	D	G	.	.	.	.	.	.	X	L	T	A	V	N	S	G	Q	V	D	A	A	A	N	D	I	D	V	T	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	T										S	T	T	.	.	.	.	.	.							T	T	S	S	S				S	S		B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																														.	.	.																																						.	.
Query SS confidence																														.	.	.																																						.	.
Query Sequence		D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	.	.	.	R	A	P	V	K	T	P	A	D	L	K	G	L	K	I	R	T	N	N	S	P	M	N	I	A	A	F	K	V	F	G	A	N	P	I	P	M	.	.	P	F	A	E	V	Y	T	G	L	E
Query Conservation																														.	.	.																																						.	.
Alig confidence		.	.	.	.	.	.	.																						.	.	.																																						.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	R	E	E	K	F	A	F	S	T	P	Y	K	Y	S	Y	G	T	A	I	V	R	K	D	D	L	S	G	I	K	T	L	K	D	L	K	G	K	K	A	A	G	A	T	T	V	Y	X	E	V	A	R	K	Y	G	A	K	E	V	I	Y	D	N	A	T	N	E	Q	Y	L	K	D	V	A
Template Known Secondary structure		.	.	.	.	.	.	.			T	T							S											T	T	T	G	G	G		S	S	G	G	G	G	T	T								S									T	T							S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.
Predicted Secondary structure																						.	.	.																																														.	.
Query SS confidence																						.	.	.																																														.	.
Query Sequence		T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	.	.	.	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S	P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E	A	G	N	.	.	Y	Q	R	K	L	V	A	E	D
Query Conservation																						.	.	.																																														.	.
Alig confidence																						.	.	.																								.	.	.	.	.																		.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		N	G	R	T	D	V	I	L	N	D	Y	Y	L	Q	T	L	A	L	A	A	F	P	D	L	N	I	T	I	H	P	D	I	K	Y	X	P	N	K	Q	A	L	V	X	K	K	S	.	.	.	.	.	N	A	A	L	Q	K	K	X	N	E	A	L	K	E	X	S	K	D	G	S	L	T	K	L	S	K	Q	F
Template Known Secondary structure		T	T	S																			T	T	S	S					S	S														T	T	.	.	.	.	.																		T	T
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions