Job Description P37676 Confidence 98.66% Date Thu Jan 5 11:56:50 GMT 2012 Rank 30 Aligned Residues 218 % Identity 17% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.													.																										.	.	.	.
Query SS confidence																							.	.	.													.																										.	.	.	.
Query Sequence		Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	.	.	.	F	N	D	L	L	Q	E	R	T	K	G	E	.	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	.	.	.	.	I	D	M	E	M	S	G	S	N	N	F	A	G	L
Query Conservation																							.	.	.													.																										.	.	.	.
Alig confidence																							.	.	.					.	.	.	.	.				.									.	.	.	.	.													.	.	.	.
Template Conservation																														.	.	.	.	.													.	.	.	.	.
Template Sequence		A	N	I	K	L	G	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	K	G	F	F	A	K	Y	.	.	.	.	.	G	M	T	G	V	E	V	S	K	Q	A	N	.	.	.	.	.	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M	P	H	L	I
Template Known Secondary structure		S								S	S	G	G	G									T	T					T	.	.	.	.	.	T		T								S	S	.	.	.	.	.												T	T	T	T	S		S						T	T
Template Predicted Secondary structure																														.	.	.	.	.													.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.															.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	V	M	N	L	L	D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	A	P	V	K	T	P	A	D	L
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	G	I	I	T	N	G	N	K	V	P	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	L	A	Q	L	I	T	Q	G	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T
Template Known Secondary structure			T	T	T	T	T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								B									G	G	G	T	T	T	T		S	S			G	G	G						T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.																											.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		164	.	.	.	.	.	170					.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure									.	.	.	.					.	.	.														.	.	.	.	.	.
Query SS confidence									.	.	.	.					.	.	.														.	.	.	.	.	.
Query Sequence		K	G	L	K	I	R	T	.	.	.	.	N	N	S	P	.	.	.	M	N	I	A	A	F	K	V	F	G	A	N	P	.	.	.	.	.	.	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H
Query Conservation									.	.	.	.					.	.	.														.	.	.	.	.	.
Alig confidence									.	.	.	.					.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	R	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y	W	F	A	A	G	G	V	D	P	D	T	D	I	D	L	L	A	V	P	P	A	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A
Template Known Secondary structure			S	S							S	S	T	T	S													T	T			T	T	T	T	S																	T									T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		231	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure								.	.	.																																		.
Query SS confidence								.	.	.																																		.
Query Sequence		H	A	Y	S	P	L	.	.	.	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	.	L	V	A	E	D	Q	Q	K	I	I	D
Query Conservation								.	.	.																																		.
Alig confidence								.	.	.																					.													.
Template Conservation																															.
Template Sequence		Q	I	W	P	Y	H	P	E	E	Y	L	A	I	R	A	D	W	V	D	K	N	P	K	A	T	K	A	L	L	.	K	G	I	M	E	A	Q	Q	W	I	D	D	P	K	N	R	P	E	V	V	Q	I	V	S
Template Known Secondary structure				S	T	T																									.												S	G	G	G
Template Predicted Secondary structure																															.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions