Job Description P37676 Confidence 100.00% Date Thu Jan 5 11:56:50 GMT 2012 Rank 7 Aligned Residues 301 % Identity 25% Template c2hpgB_ PDB info PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein Resolution 1.90 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	K	Y	T	L	R	F	G	H	V	L	A	P	G	E	P	Y	H	Q	A	F	L	K	W	A	K	A	V	E	E	K	T	N	G	D	V	R	I	E	V	F	P	S	S	Q	L	G	V	E	E	D	I	I	E	Q	I	R	X	G	A	P	V	G	W	N	T	D	S	A	R	L	G	X	Y	V	K	D	I	G
Template Known Secondary structure				S											T	T	S	T																T	T	T	S											T	T	T										T	T		S											T	T	T	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		103	.	.	.	.	.	.	110	.										.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																									.
Query SS confidence											.	.	.	.	.	.	.	.	.																									.
Query Sequence		L	L	D	V	P	F	L	F	R	.	.	.	.	.	.	.	.	.	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	.	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	L	K	G	L	K	I	R	T	N	N
Query Conservation											.	.	.	.	.	.	.	.	.																									.
Alig confidence											.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		V	X	N	L	A	Y	F	I	D	F	X	G	A	K	T	P	E	E	A	I	E	V	L	K	K	I	K	Q	S	P	T	X	Q	K	W	L	K	E	L	E	Q	R	F	G	I	K	V	L	S	F	Y	W	V	Q	G	Y	R	H	F	V	T	N	K	P	I	R	K	P	E	D	L	N	G	L	R	I	R	T	P	G
Template Known Secondary structure		G	G	G	S	T	T					T	T			S														S																																	S	S				S	G	G	G	G	T	T							S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	M	N	I	A	A	F	K	V	F	G	A	N	P	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A	Y	S	P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	A	W	Q	E	S	I	R	S	L	G	A	I	P	V	A	V	N	F	G	E	I	Y	T	A	V	Q	T	R	A	V	D	G	A	E	L	T	Y	A	N	V	Y	N	G	G	L	Y	E	V	L	K	Y	X	S	E	T	G	H	F	L	L	I	N	F	E	I	V	S	A	D	W	F	N	S	L	P	K	E	Y
Template Known Secondary structure		S											T								G	G	G							T	T	S		S												T	T	G	G	G	T																										S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		253	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																.																									.	.
Query SS confidence																.																									.	.
Query Sequence		Q	Q	A	L	V	S	S	A	Q	E	A	G	N	Y	.	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	K	E	A	G	V	E	V	I	.	.	T	D	L	D	R	K	A	F	S	D	A	L	G	N	Q	V	R	D	M	F	V	K	D	V	P	Q	G	A	D	L	L	K	A	V	D
Query Conservation																.																									.	.
Alig confidence																.																									.	.												.												.
Template Conservation																																																						.												.
Template Sequence		Q	K	I	I	E	E	E	X	D	K	A	G	I	E	V	S	L	K	I	X	K	E	L	E	E	E	Y	K	Q	K	C	I	E	K	G	X	A	V	I	P	A	S	E	I	D	K	E	A	F	X	E	K	.	A	K	Q	A	Y	K	N	L	G	L	E	.	N	A	L	N	Q	L	I	K	E	V	K
Template Known Secondary structure																							T												T	T						G	G	G	S									.								T	T			.
Template Predicted Secondary structure																																																						.												.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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