Job Description P37676 Confidence 98.81% Date Thu Jan 5 11:56:50 GMT 2012 Rank 25 Aligned Residues 223 % Identity 14% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																			.									.	.												.
Query SS confidence																			.									.	.												.
Query Sequence		S	L	A	A	Q	S	L	R	F	G	Y	E	T	S	Q	T	D	.	S	Q	H	I	A	A	K	K	.	.	F	N	D	L	L	Q	E	R	T	K	G	.	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L
Query Conservation																			.									.	.												.
Alig confidence																			.									.	.					.	.	.	.	.			.																.																				.	.	.	.	.
Template Conservation																																		.	.	.	.	.																			.																				.	.	.	.	.
Template Sequence		A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	F	Y	A	K	Y	.	.	.	.	.	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	.	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	.	.	.	.	.
Template Known Secondary structure				S		S								S	S	G	G	G									T	T					T	.	.	.	.	.	T		T	T							S								.						G	G	G	T	S		S						T		.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.																			.																				.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.													.	.	.	.	160	.	.	.
Predicted Secondary structure																																									.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	V	M	N	L	L	D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	.	.	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	.	.	.	.	.	.	.	.	.	.	.	.	P	V	K	T	P	A	D	L
Query Conservation																																									.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																										127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		164	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure													.	.	.	.	.														.	.	.	.	.	.
Query SS confidence													.	.	.	.	.														.	.	.	.	.	.
Query Sequence		K	G	L	K	I	R	T	N	N	S	P	.	.	.	.	.	M	N	I	A	A	F	K	V	F	G	A	N	P	.	.	.	.	.	.	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	L	T	H	H	A
Query Conservation													.	.	.	.	.														.	.	.	.	.	.
Alig confidence													.	.	.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L
Template Known Secondary structure		S	S						S	S	T	T	S													T	T			B	T	T	T	B							G	G	G							T	T	S		S						T	T									T	S							G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		233	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure					.	.	.																																			.
Query SS confidence					.	.	.																																			.
Query Sequence		Y	S	P	.	.	.	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	.	L	V	A	E	D	Q	Q	K	I	I	D
Query Conservation					.	.	.																																			.
Alig confidence					.	.	.																						.													.
Template Conservation																													.
Template Sequence		W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	.	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q	I	L	S
Template Known Secondary structure		B	T	T		B																							.													G	G	G
Template Predicted Secondary structure																													.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions