Job Description P37676 Confidence 98.22% Date Thu Jan 5 11:56:50 GMT 2012 Rank 37 Aligned Residues 260 % Identity 14% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	A	Q	S	L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		A	Y	P	S	K	A	I	R	V	I	V	P	F	A	P	G	G	S	T	D	I	I	A	R	L	V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	.	.	.	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	S	T	X	A	V	N	P
Template Known Secondary structure					S	S							S	S		T	T	S																		T	S										G	G	.	.	.	G										S		T	T	S	S											T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.									.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																																						.											.	.	.	.	.	.	.	.
Query SS confidence																																																						.											.	.	.	.	.	.	.	.
Query Sequence		N	L	L	D	V	P	F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	.	R	A	P	V	K	T	P	A	D	L	.	.	.	.	.	.	.	.	K	G	L	K	I	R	T	N	N
Query Conservation																																																						.											.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.											.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	C	R	P	K	D	L	P	Y	D	P	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	Q	P	V	T	N	F	A	N	T	A	N	V	V	A	V	N	P	K	F	P	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G
Template Known Secondary structure				S	T	T	T		S			T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																		T	T	S	S		S	S										T	S	T	T	T						S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.																						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		173	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.																		.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.																			.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.																			.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	.	.	.	.	.	M	N	I	A	A	F	K	V	F	G	A	N	P	I	P	M	P	F	.	.	.	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	F	E	V	Q	K	F	L	S
Query Conservation				.	.	.	.	.																			.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.																			.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	D	I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E	L	I	F	D	N	L	P	S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A
Template Known Secondary structure		T	T	S														T									S	S											T	S	S	S															T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		L	T	H	H	A	Y	S	P	L	L	V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	Q	E	A	G	N	Y	Q	R	K	L	V	A	E	D	Q	Q	K	I	I	D	G	M	K	E	A	G	V	E	V	.	.	I	T	D	L	D	R	K	A	F	S	D	A	L	G	N	Q
Query Conservation																																																																.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		D	A	G	F	P	V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D	V	V	N	K	L	R	D	A	A	V	V	A	L	.	.	.	.	.	.	.	.	.	K	D	P	K	V	I	K	A	L	D	D	Q	G	S	A	P	S	G	N	T	P	E	E	F	A	K	E	I	K	E	Q	Y	D	W
Template Known Secondary structure		T	T	T		G	G	G												T	T																		.	.	.	.	.	.	.	.	.	T												T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.										.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		306	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	D	M	F	V	K	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	D	V	V	K	K	Q	N
Template Known Secondary structure								S	T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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