Job Description P37676 Confidence 98.86% Date Thu Jan 5 11:56:50 GMT 2012 Rank 22 Aligned Residues 203 % Identity 17% Template c1p99A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus Resolution 1.70 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	F	G	Y	E	T	S	Q	T	D	S	Q	H	I	A	A	K	K	F	N	D	L	L	Q	E	R	T	K	G	E	L	K	L	K	L	F	P	D	S	T	L	G	N	A	Q	A	M	I	S	G	V	R	G	G	T	I	D	M	E	M	S	G	S	N	N	F	A	G	L	S	P	V	M	N	L	L	D	V	P
Query Conservation
Alig confidence															.	.	.	.	.																						.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																						.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	I	G	V	A	S	N	D	T	K	A	W	.	.	.	.	.	E	K	V	K	E	L	A	K	K	D	D	I	D	V	E	I	K	H	F	S	D	.	.	.	.	.	Y	N	L	P	N	K	A	L	N	D	G	D	I	D	M	N	A	F	Q	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S	S						.	.	.	.	.								G	G	G	T									S	S	.	.	.	.	.	T	T	S							T	T	S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.																						.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		F	L	F	R	D	T	A	H	A	H	K	T	L	D	G	K	V	G	D	D	L	K	A	S	L	E	G	K	G	L	K	V	L	A	Y	W	E	N	G	W	R	D	V	T	N	S	R	A	P	V	K	T	P	A	D	L	K	G	L	K	I	R	T	N	N	S	P	.	.	.	.	M	N	I	A	A	F	K	V	F
Query Conservation																																																																					.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																						.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	L	D	Q	Y	K	K	A	H	K	G	T	K	I	S	A	L	S	T	T	V	L	A	P	L	G	I	Y	S	.	D	K	I	K	D	V	K	K	V	K	D	G	A	K	V	V	I	P	N	D	V	S	N	Q	A	R	A	L	K	L	L	E	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T																			.	S	S		S		G	G	G			T	T								S														T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template SS confidence
																	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		184																								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	P	I	P	M	P	F	A	E	V	Y	T	G	L	E	T	R	T	I	D	A	Q	E	H	P	I	N	V	V	W	S	A	K	F	F	E	V	Q	K	F	L	S	.	.	.	L	T	H	H	A	Y	S	P	L	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																											.	.	.
Template Conservation																																									.	.
Template Sequence		G	L	I	K	L	K	K	D	F	G	L	A	G	T	V	K	D	I	T	S	N	P	K	H	L	K	I	T	A	V	D	A	Q	Q	T	A	R	A	L	.	.	S	D	V	D	I	A	V	I	N	N	G	V	A	T	K	A	G	K	D	P	K	N	D	P	I	F	L	E	K	S	N	S	D	A	V	K	P	Y	I
Template Known Secondary structure		T	S					T	T			T	T			G	G	G					T	T									G	G	G	T	T	G	G	G	.	.	G	T	S	S												T	T			T	T	T	S		S						S	S	G	G	G	G	G	G
Template Predicted Secondary structure																																									.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		V	V	I	N	K	A	K	F	D	G	L	S	P	E	F	Q	Q	A	L	V	S	S	A	.	Q	E	A	G	N	Y	Q	R	K	L	V	A	E
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		N	I	V	A	V	N	D	K	D	L	D	N	K	T	Y	A	K	I	V	E	L	Y	H	S	K	E	A	Q	K	A	L	Q	E	D	V	K	D
Template Known Secondary structure								G	G	G	T	T													S												T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions