Job Description P39382 Confidence 99.35% Date Thu Jan 5 12:00:14 GMT 2012 Rank 65 Aligned Residues 222 % Identity 9% Template d1nira2 SCOP info 8-bladed beta-propeller C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Resolution 2.15

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	.	.	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I
Query Conservation																										.	.
Alig confidence																										.	.																												.	.
Template Conservation																																																							.	.
Template Sequence		W	K	V	L	V	K	P	E	D	R	P	K	K	Q	L	N	D	L	D	L	P	N	L	F	S	V	T	L	R	D	A	G	Q	I	A	L	V	D	G	D	S	K	K	I	V	K	V	I	D	T	G	Y	A	.	.	V	H	I	S	R	M	S	A	S	G	R	Y	L	L	V	I	G	R	D	A	R	I	D	M	I
Template Known Secondary structure					S	S		G	G	G	S		S	S			S				G	G	G							G	G	G	T							T	T	T										S	T	T	.	.								T	T	S								T	T	S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.
Predicted Secondary structure																																													.																															.
Query SS confidence																																													.																															.
Query Sequence		S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	.	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	.	F	T	L	D	D
Query Conservation																																													.																															.
Alig confidence																				.	.	.	.																						.																															.
Template Conservation																				.	.	.	.
Template Sequence		D	L	W	A	K	E	P	T	K	V	A	E	I	K	I	G	I	E	.	.	.	.	A	R	S	V	E	S	S	K	F	K	G	Y	E	D	R	Y	T	I	A	G	A	Y	W	P	P	Q	F	A	I	M	D	G	E	T	L	E	P	K	Q	I	V	S	T	R	G	M	T	V	D	T	Q	T	Y	H	P	E	P	R
Template Known Secondary structure			T	T	S	S	S											S		.	.	.	.									S	T	T		T	T	T									S	S							T	T	T														S	S	S					S
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																																																.								.
Query SS confidence																																																																.								.
Query Sequence		V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	.	I	Y	I	V	S	E	P	.	N	R	F	Y	R	F	T	P	Q
Query Conservation																																																																.								.
Alig confidence																																													.	.	.	.	.	.	.													.								.
Template Conservation																																													.	.	.	.	.	.	.
Template Sequence		V	A	A	I	I	A	S	H	E	H	P	E	F	I	V	N	V	K	E	T	G	K	V	L	L	V	N	Y	K	D	I	D	N	L	T	V	T	S	I	G	A	A	P	.	.	.	.	.	.	.	F	L	H	D	G	G	W	D	S	S	H	R	Y	F	M	T	A	A	N	N	S	N	K	V	A	V	I	D	S	K
Template Known Secondary structure									S	S	S	S							T	T	T	T								T	T	S	S	S										S	.	.	.	.	.	.	.	S								T	T	S								G	G	G	T							T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.								.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		284
Predicted Secondary structure
Query SS confidence
Query Sequence		S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		355

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions