Job Description P39382 Confidence 99.77% Date Thu Jan 5 12:00:14 GMT 2012 Rank 18 Aligned Residues 203 % Identity 10% Template c3soqA_ PDB info PDB header:protein binding/antagonist Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide Resolution 1.90 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																					.																				.
Query SS confidence																																					.																				.
Query Sequence		T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	.	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	.	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E
Query Conservation																																					.																				.
Alig confidence																																					.																				.
Template Conservation
Template Sequence		L	E	D	A	A	A	V	D	F	V	F	S	H	G	L	I	Y	W	S	D	V	S	E	E	A	I	K	R	T	E	F	N	K	T	E	S	V	Q	N	V	V	V	S	G	L	L	S	P	D	G	L	A	C	D	W	L	G	E	K	L	Y	W	T	D	S	E	T	N	R	I	E	V	S	N	L	D	G	S	L	R
Template Known Secondary structure												G	G	G	T							T	T	T	T							T	T	S	T	T											S									T	T	T	T							T	T	T	T							T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		K	V	L	F	W	Q	.	.	.	.	.	.	.	.	.	E	L	D	Q	P	R	A	I	A	L	D	P	S	S	G	F	M	Y	W	T	D	W	G	E	V	P	K	I	E	R	A	G	M	D	G	S	S	R	F	I	I	I	N	S	E	.	.	.	.	.	.	.	.	I	Y	W	P	N	G	L	T	L	D	Y	E
Template Known Secondary structure							S	.	.	.	.	.	.	.	.	.	S		S	S								T	T	T	T								S	S	S								T	T	S		S							S	S	.	.	.	.	.	.	.	.		S									T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.										.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.	.	.	.	.	.	.	.	.	190	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	E	P	N	R	F	Y	R	F	T	P	Q	S	S
Query Conservation																																																												.
Alig confidence																																	.	.	.	.	.	.	.	.											.									.
Template Conservation																																	.	.	.	.	.	.	.	.											.
Template Sequence		E	Q	K	L	Y	W	A	D	A	K	L	N	F	I	H	K	S	N	L	D	G	T	N	R	Q	A	V	V	K	G	S	.	.	.	.	.	.	.	.	L	P	H	P	F	A	L	T	L	F	.	E	D	I	L	Y	W	T	D	W	S	T	H	S	I	L	A	C	N	K	Y	T	G
Template Known Secondary structure		T	T							T	T	T	T							T	T	S		S							S		.	.	.	.	.	.	.	.		S									.	T	T							T	T	T	T							T	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.											.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.									.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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