Job Description P39382 Confidence 99.71% Date Thu Jan 5 12:00:14 GMT 2012 Rank 28 Aligned Residues 190 % Identity 9% Template c3s94A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-e1e2 Resolution 2.80 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	.	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V
Query Conservation																																																								.
Alig confidence																																							.	.	.	.														.
Template Conservation																																							.	.	.	.
Template Sequence		L	E	D	A	A	A	V	D	F	V	F	S	H	G	L	I	Y	W	S	D	V	S	E	E	A	I	K	R	T	E	F	V	Q	N	V	V	V	.	.	.	.	S	G	L	L	S	P	D	G	L	A	C	D	W	L	G	E	K	L	Y	W	T	D	S	E	T	N	R	I	E	V	S	N	L	D	G	S	L	R	K
Template Known Secondary structure			S									T	T	T	T							T	T	T	T														.	.	.	.	S	S		S									T	T	T	T							T	T	T	T							T	T	S		S
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		V	L	F	W	Q	.	.	.	.	.	.	.	.	.	E	L	D	Q	P	R	A	I	A	L	D	P	S	S	G	F	M	Y	W	T	D	W	G	E	V	P	K	I	E	R	A	G	M	D	G	S	S	R	F	I	I	I	N	S	E	.	.	.	.	.	.	.	.	I	Y	W	P	N	G	L	T	L	D	Y	E	E
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	.	S		S									T	T	T	T								S	S	S								T	T	S		S							S	S	.	.	.	.	.	.	.	.		S	S								T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.										.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.	.	.	.	.	.	.	.	.	190	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N	R	F	Y	R	F	T	P	Q	S
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	K	L	Y	W	A	D	A	K	L	N	F	I	H	K	S	N	L	D	G	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	P	F	A	L	T	L	F	E	D	I	L	Y	W	T	D	W	S	T	H	S	I	L	A	C	N	K	Y	T
Template Known Secondary structure		T							T	T	T							S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S							T	T	T		S						S	S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions